Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1864 ATGATGATGAAAGGAAATTTAGTGGTGGATGAGAATTTGTCTATATTGACTTGTGCATCTGCTGATGATGTAACAAGAAATGAAATTACCATTGACCCTCTCTATACTCATCACTCCTCTGCTTCACCGCCACCACAGCCGCCACCATCGAAGAAGAAGCGGAATCTACCCGGAAACCCAGACCCAGATGCTGAAGTGATAGCTTTGTCGCCGAAATCACTTGTGGCGACGAATAGATTCGTGTGCGAGATCTGCAACAAGGGGTTTCAAAGAGATCAGAATCTTCAACTCCATAGAAGAGGGCATAATTTGCCATGGAAGCTAAAGCAAAGAGGGAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCCGAACCAACATGCGTGCATCATCACCCGTCGAGGGCTCTCGGAGATCTAACCGGGATCAAGAAGCACTTTTGCAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGTTCAAAGAGATATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGATTTGTGGCACTAGAGAGTATAGATGTGATTGTGGAACTCTCTTCTCTAGGAGGGACAGTTTCATAACACACAGAGCATTCTGCAATGCCTTGGCTCAGGAAAGTACCAATAATTTTATAACATCATCAGCCATAAATAACAACAACCCAATTAATATTCCAACTATTTTCCCATCACTTTGCCAATTCCCACTTATCAAAACTGAAAACTATGACCATTTTTACCCTTCAACTAATTCTCATCATCAACAACCACAACTCCAACTTCCCTTTCCCAACCCTCAACAAAACCCTAACCCTACTCCCATTGGGTTCGGGTTACCTAGCCCGGGATCGGGTCTTAGTCCCGTGTTTGGCTCGGCGTGGGAATTGAACTCCCCGGCCGAAACCCCGCCTCTTCCTTTTCACCATCACATGATGGCATTTCAAGATGCATCCTTTGAAGAAGTTCTTAATGGGATGTTGGTGAATAACAGAGACGGTCGTGGTGGCGGAGGCGGCGGCGGTGGTGATAATGGAGAGACGACGAGGGATTTTTTAGGGCTGAGAGCTGTGGCTCGACAGGCGGAACGTCGTGTGTTCGAGAATGAGATGATGAACGACATGTCGAATCTTGATTCTTCTTCTTTTACGTTTGGATTAAACCAGAATCATCAAATTGCCCAGACGACGTTTTGGAGTGATAAATTGGTTGGTTAA 1227 45.48 MMMKGNLVVDENLSILTCASADDVTRNEITIDPLYTHHSSASPPPQPPPSKKKRNLPGNPDPDAEVIALSPKSLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRGNKEVRKKVYVCPEPTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCNALAQESTNNFITSSAINNNNPINIPTIFPSLCQFPLIKTENYDHFYPSTNSHHQQPQLQLPFPNPQQNPNPTPIGFGLPSPGSGLSPVFGSAWELNSPAETPPLPFHHHMMAFQDASFEEVLNGMLVNNRDGRGGGGGGGGDNGETTRDFLGLRAVARQAERRVFENEMMNDMSNLDSSSFTFGLNQNHQIAQTTFWSDKLVG 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23640561 23643456 - Sed0000688.1 Sed13g1864 735374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1864 408 Gene3D Classic Zinc Finger 149 215 - -
Sed13g1864 408 SMART c2h2final6 80 102 IPR013087 -
Sed13g1864 408 SMART c2h2final6 156 176 IPR013087 -
Sed13g1864 408 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 39 298 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed13g1864 408 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 155 179 - -
Sed13g1864 408 SUPERFAMILY beta-beta-alpha zinc fingers 79 176 IPR036236 -
Sed13g1864 408 Gene3D Classic Zinc Finger 61 127 - -
Sed13g1864 408 MobiDBLite consensus disorder prediction 40 55 - -
Sed13g1864 408 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 117 151 - -
Sed13g1864 408 Pfam Zinc finger, C2H2 type 80 102 IPR013087 -
Sed13g1864 408 FunFam protein indeterminate-domain 12-like 59 127 - -
Sed13g1864 408 FunFam protein indeterminate-domain 5, chloroplastic-like 134 213 - -
Sed13g1864 408 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Sed13g1864 408 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 182 215 - -
Sed13g1864 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Sed13g1864 408 MobiDBLite consensus disorder prediction 35 63 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0293 Sed-Chr6:2540922 Sed13g1864 Sed-Chr13:23640561 7.20E-82 dispersed
Sed07g1321 Sed-Chr7:10092360 Sed13g1864 Sed-Chr13:23640561 1.70E-87 dispersed
Sed09g1096 Sed-Chr9:34860892 Sed13g1864 Sed-Chr13:23640561 6.20E-84 dispersed
Sed13g1670 Sed-Chr13:21730189 Sed13g1864 Sed-Chr13:23640561 1.20E-82 dispersed
Sed13g1864 Sed-Chr13:23640561 Sed14g1101 Sed-Chr14:20503976 1.10E-78 dispersed
Sed13g1864 Sed-Chr13:23640561 Sed09g1680 Sed-Chr9:40159673 3.50E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40473 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1864 K25870 - csv:101215280 464.151