Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1868 ATGGATGCTTTTTCTCGAACAGTGATGGCAAGTGTGCCGGTTGGAGCGGGTGCAATACTGTTCACAACGCTATGCGTCGTGGTTGGAGGTTTGGTTTATTTCTATGGACCGTACTGGGGAGTTAGAAGGGTGCCTGGTCCACCGGCTATACCGCTGGTCGGACACCTTCCCTTGCTGGCTAAGTACGGCCCAGATGTTTTCTCAGTTCTCGCCTCCCAATATGGTCCTATTTTCAGGTTCCATATGGGTCGGCAGCCATTGATAATTATTGCAGACCCTGAGCTTTGTAAAGAAGTTGGTATCAAGAAGTTCAAGGACATCCCGAATAGAAGTGTCCCTTCTCCAATTTCAGCTTCCCCACTTCATCAGAAAGGTCTTTTCTTCACAAGGGATGCAAGATGGTCAACAATGCGAAACACGATATTATCGGTTTATCAGCACTCTCATCTAACGAGCTTAATACCAACTATGCAATCAATCATTGAAACTGCAACTCAAAATCTCCATTCCTCTGTCGAGCAAGACATCCCTTTCTCCAATCTCTCCCTCAAATTGACCACCGATGTGATTGGAACTGCAGCCTTCGGTGTCAACTTTGGGCTCTCAAATCCACAAGCAACCAAAACTTGTGCTACCAATGGCCAAGACATAAAAAACGACGAAGTTTCGGACTTCATCAACCAACATATCTACTCCACAACGCAGCTCAAGATGGATTTATCAGGTTCCTTTTCAATAATCTTGGGACTACTTGTTCCTATACTCCAAGAACCATTTAGACAAGTCCTGAAGAGAATACCCTTCACCATGGACTGGAAAGTCGACCGGACAAATCAGAAGTTGAGCGGCCGGCTTAACGAGATTGTCGACAAGCGAATGAAGCGCAACGATCGAGGTTCGAAAGACTTCCTGTCACTTATATTGAGAGCTAGAGAGTCCGAGACGGTATCGAGGAATGTCTTCACTCCAGACTACATCAGTGCAGTCACGTATGAACACCTACTAGCCGGGTCGGCTACCACAGCGTTCACTTTGTCTTCTGTTGTATATTTAGTTGCTGGACATCTAGAAGTCGAGGAGAAGTTGCTAGAAGAGATTGACAACTTTGGTCCATCAGAACAGATACCAACAGCTAATGATCTTCAGCAGAAGTTTCCATATCTTGATCAGGTGATTAAAGAGGCTATGAGGTTCTACACTGTTTCACCTCTGGTAGCTAGAGAGACATCTAAAGATGTGGAGATTGGTGGATATCTTCTTCCAAAGGGTCGAACATTGCAGGGTCCAGCCCAAACATTCATAGTTTTAAAAATAAAAATAAATTAA 1326 44.72 MDAFSRTVMASVPVGAGAILFTTLCVVVGGLVYFYGPYWGVRRVPGPPAIPLVGHLPLLAKYGPDVFSVLASQYGPIFRFHMGRQPLIIIADPELCKEVGIKKFKDIPNRSVPSPISASPLHQKGLFFTRDARWSTMRNTILSVYQHSHLTSLIPTMQSIIETATQNLHSSVEQDIPFSNLSLKLTTDVIGTAAFGVNFGLSNPQATKTCATNGQDIKNDEVSDFINQHIYSTTQLKMDLSGSFSIILGLLVPILQEPFRQVLKRIPFTMDWKVDRTNQKLSGRLNEIVDKRMKRNDRGSKDFLSLILRARESETVSRNVFTPDYISAVTYEHLLAGSATTAFTLSSVVYLVAGHLEVEEKLLEEIDNFGPSEQIPTANDLQQKFPYLDQVIKEAMRFYTVSPLVARETSKDVEIGGYLLPKGRTLQGPAQTFIVLKIKIN 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23704576 23712155 + Sed0009036.2 Sed13g1868 735378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1868 441 SUPERFAMILY Cytochrome P450 37 428 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1868 441 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1868 441 PRINTS E-class P450 group I signature 389 407 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1868 441 PRINTS E-class P450 group I signature 345 371 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1868 441 PRINTS E-class P450 group I signature 325 342 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1868 441 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1868 441 Gene3D Cytochrome P450 35 433 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed13g1868 441 PANTHER THROMBOXANE-A SYNTHASE 21 426 - -
Sed13g1868 441 Pfam Cytochrome P450 45 426 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1868 Sed-Chr13:23704576 Sed04g0569 Sed-Chr4:4331800 4.70E-22 dispersed
Sed13g1867 Sed-Chr13:23704576 Sed13g1868 Sed-Chr13:23704576 3.60E-242 tandem
Sed13g1868 Sed-Chr13:23704576 Sed13g1869 Sed-Chr13:23704576 5.10E-242 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1868 K20771 - csv:101209772 777.319