Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1868 | ATGGATGCTTTTTCTCGAACAGTGATGGCAAGTGTGCCGGTTGGAGCGGGTGCAATACTGTTCACAACGCTATGCGTCGTGGTTGGAGGTTTGGTTTATTTCTATGGACCGTACTGGGGAGTTAGAAGGGTGCCTGGTCCACCGGCTATACCGCTGGTCGGACACCTTCCCTTGCTGGCTAAGTACGGCCCAGATGTTTTCTCAGTTCTCGCCTCCCAATATGGTCCTATTTTCAGGTTCCATATGGGTCGGCAGCCATTGATAATTATTGCAGACCCTGAGCTTTGTAAAGAAGTTGGTATCAAGAAGTTCAAGGACATCCCGAATAGAAGTGTCCCTTCTCCAATTTCAGCTTCCCCACTTCATCAGAAAGGTCTTTTCTTCACAAGGGATGCAAGATGGTCAACAATGCGAAACACGATATTATCGGTTTATCAGCACTCTCATCTAACGAGCTTAATACCAACTATGCAATCAATCATTGAAACTGCAACTCAAAATCTCCATTCCTCTGTCGAGCAAGACATCCCTTTCTCCAATCTCTCCCTCAAATTGACCACCGATGTGATTGGAACTGCAGCCTTCGGTGTCAACTTTGGGCTCTCAAATCCACAAGCAACCAAAACTTGTGCTACCAATGGCCAAGACATAAAAAACGACGAAGTTTCGGACTTCATCAACCAACATATCTACTCCACAACGCAGCTCAAGATGGATTTATCAGGTTCCTTTTCAATAATCTTGGGACTACTTGTTCCTATACTCCAAGAACCATTTAGACAAGTCCTGAAGAGAATACCCTTCACCATGGACTGGAAAGTCGACCGGACAAATCAGAAGTTGAGCGGCCGGCTTAACGAGATTGTCGACAAGCGAATGAAGCGCAACGATCGAGGTTCGAAAGACTTCCTGTCACTTATATTGAGAGCTAGAGAGTCCGAGACGGTATCGAGGAATGTCTTCACTCCAGACTACATCAGTGCAGTCACGTATGAACACCTACTAGCCGGGTCGGCTACCACAGCGTTCACTTTGTCTTCTGTTGTATATTTAGTTGCTGGACATCTAGAAGTCGAGGAGAAGTTGCTAGAAGAGATTGACAACTTTGGTCCATCAGAACAGATACCAACAGCTAATGATCTTCAGCAGAAGTTTCCATATCTTGATCAGGTGATTAAAGAGGCTATGAGGTTCTACACTGTTTCACCTCTGGTAGCTAGAGAGACATCTAAAGATGTGGAGATTGGTGGATATCTTCTTCCAAAGGGTCGAACATTGCAGGGTCCAGCCCAAACATTCATAGTTTTAAAAATAAAAATAAATTAA | 1326 | 44.72 | MDAFSRTVMASVPVGAGAILFTTLCVVVGGLVYFYGPYWGVRRVPGPPAIPLVGHLPLLAKYGPDVFSVLASQYGPIFRFHMGRQPLIIIADPELCKEVGIKKFKDIPNRSVPSPISASPLHQKGLFFTRDARWSTMRNTILSVYQHSHLTSLIPTMQSIIETATQNLHSSVEQDIPFSNLSLKLTTDVIGTAAFGVNFGLSNPQATKTCATNGQDIKNDEVSDFINQHIYSTTQLKMDLSGSFSIILGLLVPILQEPFRQVLKRIPFTMDWKVDRTNQKLSGRLNEIVDKRMKRNDRGSKDFLSLILRARESETVSRNVFTPDYISAVTYEHLLAGSATTAFTLSSVVYLVAGHLEVEEKLLEEIDNFGPSEQIPTANDLQQKFPYLDQVIKEAMRFYTVSPLVARETSKDVEIGGYLLPKGRTLQGPAQTFIVLKIKIN | 441 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 23704576 | 23712155 | + | Sed0009036.2 | Sed13g1868 | 735378 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1868 | 441 | SUPERFAMILY | Cytochrome P450 | 37 | 428 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
Sed13g1868 | 441 | PRINTS | E-class P450 group I signature | 71 | 90 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
Sed13g1868 | 441 | PRINTS | E-class P450 group I signature | 389 | 407 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
Sed13g1868 | 441 | PRINTS | E-class P450 group I signature | 345 | 371 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
Sed13g1868 | 441 | PRINTS | E-class P450 group I signature | 325 | 342 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
Sed13g1868 | 441 | PRINTS | E-class P450 group I signature | 185 | 203 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
Sed13g1868 | 441 | Gene3D | Cytochrome P450 | 35 | 433 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
Sed13g1868 | 441 | PANTHER | THROMBOXANE-A SYNTHASE | 21 | 426 | - | - | |
Sed13g1868 | 441 | Pfam | Cytochrome P450 | 45 | 426 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed13g1868 | Sed-Chr13:23704576 | Sed04g0569 | Sed-Chr4:4331800 | 4.70E-22 | dispersed | |
Sed13g1867 | Sed-Chr13:23704576 | Sed13g1868 | Sed-Chr13:23704576 | 3.60E-242 | tandem | |
Sed13g1868 | Sed-Chr13:23704576 | Sed13g1869 | Sed-Chr13:23704576 | 5.10E-242 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1868 | K20771 | - | csv:101209772 | 777.319 |