Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g1869 | ATGGATGCTTTTTCTCGAACAGTGATGGCAAGTGTGCCGGTTGGAGCGGGTGCAATACTGTTCACAACGCTATGCGTCGTGGTTGGAGGTTTGGTTTATTTCTATGGACCGTACTGGGGAGTTAGAAGGGTGCCTGGTCCACCGGCTATACCGCTGGTCGGACACCTTCCCTTGCTGGCTAAGTACGGCCCAGATGTTTTCTCAGTTCTCGCCTCCCAATATGGTCCTATTTTCAGGTTCCATATGGGTCGGCAGCCATTGATAATTATTGCAGACCCTGAGCTTTGTAAAGAAGTTGGTATCAAGAAGTTCAAGGACATCCCGAATAGAAGTGTCCCTTCTCCAATTTCAGCTTCCCCACTTCATCAGAAAGGTCTTTTCTTCACAAGGGATGCAAGATGGTCAACAATGCGAAACACGATATTATCGGTTTATCAGCACTCTCATCTAACGAGCTTAATACCAACTATGCAATCAATCATTGAAACTGCAACTCAAAATCTCCATTCCTCTGTCGAGCAAGACATCCCTTTCTCCAATCTCTCCCTCAAATTGACCACCGATGTGATTGGAACTGCAGCCTTCGGTGTCAACTTTGGGCTCTCAAATCCACAAGCAACCAAAACTTGTGCTACCAATGGCCAAGACATAAAAAACGACGAAGTTTCGGACTTCATCAACCAACATATCTACTCCACAACGCAGCTCAAGATGGATTTATCAGGTTCCTTTTCAATAATCTTGGGACTACTTGTTCCTATACTCCAAGAACCATTTAGACAAGTCCTGAAGAGAATACCCTTCACCATGGACTGGAAAGTCGACCGGACAAATCAGAAGTTGAGCGGCCGGCTTAACGAGATTGTCGACAAGCGAATGAAGCGCAACGATCGAGGTTCGAAAGACTTCCTGTCACTTATATTGAGAGCTAGAGAGTCCGAGACGGTATCGAGGAATGTCTTCACTCCAGACTACATCAGTGCAGTCACGTATGAACACCTACTAGCCGGGTCGGCTACCACAGCGTTCACTTTGTCTTCTGTTGTATATTTAGTTGCTGGACATCTAGAAGTCGAGGAGAAGTTGCTAGAAGAGATTGACAACTTTGGTCCATCAGAACAGATACCAACAGCTAATGATCTTCAGCAGAAGTTTCCATATCTTGATCAGGTGATTAAAGAGGCTATGAGGTTCTACACTGTTTCACCTCTGGTAGCTAGAGAGACATCTAAAGATGTGGAGATTGGTGGATATCTTCTTCCAAAGGGGACATGGGTTTGGTTAGCACTAGGAGTTCTTGCCAAGGATCCAAAGAACTTTCCAGAACCAGATAAGTTTAAACCAGAGAGGTTTGATCCAGATGAGGAAGAGGAGAAACAGAGGCATCCCTATGCTTTAATCCCATTCGGAATCGGTCCTCGAGCGTGCATCGGTCAGAAATTCGCCCTTCAAGAGTTGAAGCTCTCTCTGATTCATTTGTATAGGAAATTCGTATTTCGACATTCTCCTTCCATGGAACAACCTCTTGAACTTGAGTATGGTGTCATTCTCAACTTCAAGAATGGTGTCAAGCTCCGAGTTATAAACCGTAAATAG | 1596 | 44.99 | MDAFSRTVMASVPVGAGAILFTTLCVVVGGLVYFYGPYWGVRRVPGPPAIPLVGHLPLLAKYGPDVFSVLASQYGPIFRFHMGRQPLIIIADPELCKEVGIKKFKDIPNRSVPSPISASPLHQKGLFFTRDARWSTMRNTILSVYQHSHLTSLIPTMQSIIETATQNLHSSVEQDIPFSNLSLKLTTDVIGTAAFGVNFGLSNPQATKTCATNGQDIKNDEVSDFINQHIYSTTQLKMDLSGSFSIILGLLVPILQEPFRQVLKRIPFTMDWKVDRTNQKLSGRLNEIVDKRMKRNDRGSKDFLSLILRARESETVSRNVFTPDYISAVTYEHLLAGSATTAFTLSSVVYLVAGHLEVEEKLLEEIDNFGPSEQIPTANDLQQKFPYLDQVIKEAMRFYTVSPLVARETSKDVEIGGYLLPKGTWVWLALGVLAKDPKNFPEPDKFKPERFDPDEEEEKQRHPYALIPFGIGPRACIGQKFALQELKLSLIHLYRKFVFRHSPSMEQPLELEYGVILNFKNGVKLRVINRK | 531 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 23704576 | 23712155 | + | Sed0009036.3 | Sed13g1869 | 735379 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g1869 | 531 | PRINTS | E-class P450 group I signature | 325 | 342 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | PRINTS | E-class P450 group I signature | 389 | 407 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | PRINTS | E-class P450 group I signature | 476 | 499 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | PRINTS | E-class P450 group I signature | 429 | 453 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | PRINTS | E-class P450 group I signature | 71 | 90 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | PRINTS | E-class P450 group I signature | 185 | 203 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | PRINTS | E-class P450 group I signature | 345 | 371 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | PRINTS | E-class P450 group I signature | 466 | 476 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | PRINTS | P450 superfamily signature | 390 | 401 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | PRINTS | P450 superfamily signature | 476 | 487 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | PRINTS | P450 superfamily signature | 467 | 476 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | PRINTS | P450 superfamily signature | 336 | 353 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | FunFam | Cytochrome P450 3A4 | 32 | 531 | - | - | |
| Sed13g1869 | 531 | MobiDBLite | consensus disorder prediction | 441 | 460 | - | - | |
| Sed13g1869 | 531 | Pfam | Cytochrome P450 | 45 | 513 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | Gene3D | Cytochrome P450 | 35 | 531 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed13g1869 | 531 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 469 | 478 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed13g1869 | 531 | PANTHER | THROMBOXANE-A SYNTHASE | 21 | 530 | - | - | |
| Sed13g1869 | 531 | SUPERFAMILY | Cytochrome P450 | 37 | 530 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed13g1867 | Sed-Chr13:23704576 | Sed13g1869 | Sed-Chr13:23704576 | 0.00E+00 | dispersed | |
| Sed13g1869 | Sed-Chr13:23704576 | Sed04g0569 | Sed-Chr4:4331800 | 1.80E-31 | dispersed | |
| Sed13g1868 | Sed-Chr13:23704576 | Sed13g1869 | Sed-Chr13:23704576 | 5.10E-242 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g1869 | K20771 | - | csv:101209772 | 991.49 |