Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1870 ATGGGGGGTTCTGGGAAATGGATGAAGGTTCTTTTAGGACACAAAAAGTCTGAGAAGGAAGACAATGAGAAATTGGGGAGTAAAACTAAGAAATGGAGGCTATGGAGGAGTCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGCACATAGAGCAGCTTCTGAAGGCTCTGATTCTCCTCTAGCCGCTGATTCTTTTACCGCCGCTGTCGCCACCGTACTCCGTGCTCCGCTGAAGGATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTCGAATCCAAACCGCTTTTCGCGGTTTCTTGTCTAGGAGAGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGGTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTAGTTCGAGTTCAAGCTCGAGTCAGGGCTCGCCGTGTGAGGATGTCGATCGAGGGGCAGGCGGTGCAGCAATTGCTCGATGTACATCGCAGCAAGGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGCAGATATCAGAACTAAGTTACAAATGAGGCAAGATGGAGCTTTTAAAAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACGCCGAGCTCGACTTTGCGAACAAATGCTTCGATTTATGCTCTCAAGAATTTAGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCGGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGAACCGACTCAATTGAAGTCACTCCACCTTCAAAGAGCTGTACGGAGTCTGTTATGTCTAAACATTCCAAAGGTTGTGAACCAAGTTTTGTGAAAGTTAGGAAGAACAATGTATCTACTAGAATTTCAGCTAAACCTCCCTCAAGTGGACAAGCTCGTTCTTGTTCTAGTCCAAGTTCTGATTTCTGGTACGATGAGAGTTCTGCTTCATCATCGATCTGTACATCGACGACTCCCGTTTCGGGGCATGCTTTCTCAACCGTAGAAAGAACAGAGAATAGCATTTACAGTAGGCCAAGTTACATGTGCCTTACCGAGTCGACAAAGGCAAAGCAGAAGATGAACAGTCACTTATCGCAACGAGTTCAAAGGCAGTCCATGGATGAATATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCCAAGAGCAGTGTTGGCTCTGATTCATCAGTCAACCCGTTTAAGCCATCGACGATGCCAACACGATTCGATAGGCATGGAACAAAGCTAAGGTCTTGA 1335 47.64 MGGSGKWMKVLLGHKKSEKEDNEKLGSKTKKWRLWRSPSGDLSSAWKGYKGAHRAASEGSDSPLAADSFTAAVATVLRAPLKDFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQQLLDVHRSKADLLKQAEEGWCDSKGTLADIRTKLQMRQDGAFKRERAIAYSLVQKQLKATPSSTLRTNASIYALKNLEFDKNNWGWSWLERWMAAKPWETRLMEQSRTDSIEVTPPSKSCTESVMSKHSKGCEPSFVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTVERTENSIYSRPSYMCLTESTKAKQKMNSHLSQRVQRQSMDEYQFLQKSAAFSNGDSKSSVGSDSSVNPFKPSTMPTRFDRHGTKLRS 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23712252 23715404 - Sed0026421.1 Sed13g1870 735380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1870 444 SMART iq_5 111 132 IPR000048 GO:0005515(InterPro)
Sed13g1870 444 SMART iq_5 88 110 IPR000048 GO:0005515(InterPro)
Sed13g1870 444 ProSiteProfiles IQ motif profile. 113 140 - -
Sed13g1870 444 FunFam IQ-domain 11 88 139 - -
Sed13g1870 444 MobiDBLite consensus disorder prediction 270 289 - -
Sed13g1870 444 ProSiteProfiles IQ motif profile. 89 117 - -
Sed13g1870 444 MobiDBLite consensus disorder prediction 408 429 - -
Sed13g1870 444 PANTHER IQ-DOMAIN 5-RELATED 6 398 - -
Sed13g1870 444 MobiDBLite consensus disorder prediction 408 444 - -
Sed13g1870 444 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515(InterPro)
Sed13g1870 444 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2582 Sed-Chr8:38277946 Sed13g1870 Sed-Chr13:23712252 7.10E-13 dispersed
Sed08g2583 Sed-Chr8:38277946 Sed13g1870 Sed-Chr13:23712252 7.10E-13 dispersed
Sed12g1498 Sed-Chr12:20358581 Sed13g1870 Sed-Chr13:23712252 4.10E-42 dispersed
Sed13g0057 Sed-Chr13:341395 Sed13g1870 Sed-Chr13:23712252 7.30E-15 dispersed
Sed13g1870 Sed-Chr13:23712252 Sed14g1502 Sed-Chr14:23347089 2.70E-25 dispersed
Sed13g1870 Sed-Chr13:23712252 Sed13g1871 Sed-Chr13:23712252 1.30E-221 tandem
Sed11g1830 Sed-Chr11:33109301 Sed13g1870 Sed-Chr13:23712252 2.00E-177 wgd
Sed13g1870 Sed-Chr13:23712252 Sed09g1679 Sed-Chr9:40143451 8.00E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1870 - - - 0.0