Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1871 ATGGGGTTGTGTTTGGTGTTGTTTTTACAGGAGAAATTGGGGAGTAAAACTAAGAAATGGAGGCTATGGAGGAGTCCATCAGGGGATTTGAGCTCTGCTTGGAAGGGTTATAAAGGGGCACATAGAGCAGCTTCTGAAGGCTCTGATTCTCCTCTAGCCGCTGATTCTTTTACCGCCGCTGTCGCCACCGTACTCCGTGCTCCGCTGAAGGATTTCAGGGCTGTCCGCCAAGAATGGGCTGCAATTCGAATCCAAACCGCTTTTCGCGGTTTCTTGTCTAGGAGAGCTCTTAGGGCCTTGAAGGGAGTGGTGAGGCTTCAAGCTCTGGTGAGGGGTCGGTTGGTGAGGAAGCAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTAGTTCGAGTTCAAGCTCGAGTCAGGGCTCGCCGTGTGAGGATGTCGATCGAGGGGCAGGCGGTGCAGCAATTGCTCGATGTACATCGCAGCAAGGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGGACATTGGCAGATATCAGAACTAAGTTACAAATGAGGCAAGATGGAGCTTTTAAAAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAACGCCGAGCTCGACTTTGCGAACAAATGCTTCGATTTATGCTCTCAAGAATTTAGAGTTCGACAAGAACAATTGGGGATGGAGTTGGTTGGAGAGATGGATGGCGGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGAACCGACTCAATTGAAGTCACTCCACCTTCAAAGAGCTGTACGGAGTCTGTTATGTCTAAACATTCCAAAGGTTGTGAACCAAGTTTTGTGAAAGTTAGGAAGAACAATGTATCTACTAGAATTTCAGCTAAACCTCCCTCAAGTGGACAAGCTCGTTCTTGTTCTAGTCCAAGTTCTGATTTCTGGTACGATGAGAGTTCTGCTTCATCATCGATCTGTACATCGACGACTCCCGTTTCGGGGCATGCTTTCTCAACCGTAGAAAGAACAGAGAATAGCATTTACAGTAGGCCAAGTTACATGTGCCTTACCGAGTCGACAAAGGCAAAGCAGAAGATGAACAGTCACTTATCGCAACGAGTTCAAAGGCAGTCCATGGATGAATATCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCCAAGAGCAGTGTTGGCTCTGATTCATCAGTCAACCCGTTTAAGCCATCGACGATGCCAACACGATTCGATAGGCATGGAACAAAGCTAAGGTCTTGA 1299 47.73 MGLCLVLFLQEKLGSKTKKWRLWRSPSGDLSSAWKGYKGAHRAASEGSDSPLAADSFTAAVATVLRAPLKDFRAVRQEWAAIRIQTAFRGFLSRRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQQLLDVHRSKADLLKQAEEGWCDSKGTLADIRTKLQMRQDGAFKRERAIAYSLVQKQLKATPSSTLRTNASIYALKNLEFDKNNWGWSWLERWMAAKPWETRLMEQSRTDSIEVTPPSKSCTESVMSKHSKGCEPSFVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTVERTENSIYSRPSYMCLTESTKAKQKMNSHLSQRVQRQSMDEYQFLQKSAAFSNGDSKSSVGSDSSVNPFKPSTMPTRFDRHGTKLRS 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23712252 23715404 - Sed0026421.2 Sed13g1871 735381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1871 432 ProSiteProfiles IQ motif profile. 77 105 - -
Sed13g1871 432 PANTHER IQ-DOMAIN 5-RELATED 23 386 - -
Sed13g1871 432 MobiDBLite consensus disorder prediction 258 277 - -
Sed13g1871 432 ProSiteProfiles IQ motif profile. 101 128 - -
Sed13g1871 432 MobiDBLite consensus disorder prediction 396 417 - -
Sed13g1871 432 SMART iq_5 99 120 IPR000048 GO:0005515(InterPro)
Sed13g1871 432 SMART iq_5 76 98 IPR000048 GO:0005515(InterPro)
Sed13g1871 432 Pfam IQ calmodulin-binding motif 79 98 IPR000048 GO:0005515(InterPro)
Sed13g1871 432 Pfam IQ calmodulin-binding motif 101 118 IPR000048 GO:0005515(InterPro)
Sed13g1871 432 FunFam IQ-domain 11 76 127 - -
Sed13g1871 432 MobiDBLite consensus disorder prediction 396 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1679 Sed-Chr9:40143451 Sed13g1871 Sed-Chr13:23712252 1.70E-61 dispersed
Sed11g1830 Sed-Chr11:33109301 Sed13g1871 Sed-Chr13:23712252 8.60E-165 dispersed
Sed13g1871 Sed-Chr13:23712252 Sed14g1502 Sed-Chr14:23347089 2.60E-25 dispersed
Sed13g1870 Sed-Chr13:23712252 Sed13g1871 Sed-Chr13:23712252 1.30E-221 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1871 - - - 0.0