Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1883 ATGGAGGATCGGAAGGAGGAAGAGAAGGCAGAAGAGGTGCAAGGTTCGAGTCTGACGATGGAGAAAGTGGCGGCAGCTAAGAAGCTTATAGAGAATCATTACAGAGCTCAGATGAAGAACATTCAAGAACGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCGTCGGATGTACCTAAGGAAGAACAGATCACACTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAGAGGCACAGGATTTGTGTTGATGATTTTGAGCTCTTAACCATCATTGGCAGGGGGGCATTTGGTGAGGTTCGATTATGTCGCGAGAAGAAATCTGGCGATATATATGCCATGAAAAAGTTGAAAAAATCAGAAATGCTTATGAGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCATTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCCGAGTACTTGTATTTGATCATGGAATATCTGCCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACATTGTCCGAAAATGTGGCTAAATTTTACATTGCGCAAAGTGTTCTTGCAATAGAATCTATTCACAAGCACAACTATATTCACAGGGATATTAAACCTGACAATCTTCTTTTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGTCTTTGTAAGCCACTGCATTCTTTGACCCTATCAGCACTACATGAAAATAAAGCCATGGATGATGACAATTTGGCAGAACCTATGGATATTGATGATAATAGGAGTAGTTGGAAGAGTCCCAGCGAACAGCTACACCATTGGCAAATGAACCGGAGGAAACTGGCATTTTCAACAGTCGGAACACCGGATTATATAGCTCCAGAAGTATTACTTAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTATGAGATGCTCGTAGGCTACCCTCCATTTTACGCCGATGATCCAATCTCCACCTGCAGAAAGATTGTTCATTGGAAAAACCACTTGAAGTTTCCAGAAGATGCTAAGTTGACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTTTGCGACGTTGAACATAGACTTGGTACTGGAGGAGCGTACCAAATTAAAGCTCATCCTTGGTTCAAAGATGTCGTCTGGGATAGACTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTCATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAGCGCGGCTCAGGACCCTCGAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACATACAAGAACTTCGATGCTGTCAAAGGGCTTCATGGATCACATGATTCTCAGAGATTGTCAATGGAACAGCCTCCAATTGACGTATTAAATGGCACTGGGGGAGACTACACAGCCGAACTTATCGCCAACGAGGCCGAAATGCAGATGCTAGCATTATCAGGAGACCCCATGTTGCCCTAG 1548 42.96 MEDRKEEEKAEEVQGSSLTMEKVAAAKKLIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQITLIKDLERKETEFMRLKRHRICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLSENVAKFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLHSLTLSALHENKAMDDDNLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYADDPISTCRKIVHWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGLHGSHDSQRLSMEQPPIDVLNGTGGDYTAELIANEAEMQMLALSGDPMLP 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23834491 23841957 + Sed0020728.1 Sed13g1883 735393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1883 515 ProSiteProfiles AGC-kinase C-terminal domain profile. 394 467 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1883 515 Pfam Protein kinase domain 93 242 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1883 515 Pfam Protein kinase domain 284 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1883 515 CDD STKc_NDR_like 90 458 - -
Sed13g1883 515 Gene3D Phosphorylase Kinase; domain 1 83 177 - -
Sed13g1883 515 FunFam Non-specific serine/threonine protein kinase 412 422 - -
Sed13g1883 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1883 515 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 461 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed13g1883 515 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524(InterPro)
Sed13g1883 515 Gene3D Transferase(Phosphotransferase) domain 1 178 410 - -
Sed13g1883 515 SUPERFAMILY Protein kinase-like (PK-like) 76 431 IPR011009 -
Sed13g1883 515 SMART pkinase_C_6 394 459 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1883 515 FunFam Non-specific serine/threonine protein kinase 292 411 - -
Sed13g1883 515 SMART serkin_6 92 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1883 515 ProSiteProfiles Protein kinase domain profile. 92 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1883 515 Pfam Protein kinase C terminal domain 412 457 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1883 515 FunFam Non-specific serine/threonine protein kinase 53 175 - -
Sed13g1883 515 CDD MobB_NDR_LATS-like 26 87 - -
Sed13g1883 515 FunFam Non-specific serine/threonine protein kinase 176 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1997 Sed-Chr8:34316100 Sed13g1883 Sed-Chr13:23834491 1.10E-71 dispersed
Sed08g1998 Sed-Chr8:34316100 Sed13g1883 Sed-Chr13:23834491 1.10E-71 dispersed
Sed10g1254 Sed-Chr10:27155025 Sed13g1883 Sed-Chr13:23834491 2.90E-164 dispersed
Sed12g1748 Sed-Chr12:28514315 Sed13g1883 Sed-Chr13:23834491 3.20E-196 dispersed
Sed12g1913 Sed-Chr12:30259913 Sed13g1883 Sed-Chr13:23834491 3.90E-53 dispersed
Sed13g1883 Sed-Chr13:23834491 Sed14g1668 Sed-Chr14:24779204 1.00E-177 dispersed
Sed13g1883 Sed-Chr13:23834491 Sed13g1884 Sed-Chr13:23834491 1.10E-277 tandem
Sed11g1822 Sed-Chr11:33038967 Sed13g1883 Sed-Chr13:23834491 1.30E-281 wgd
Sed12g1747 Sed-Chr12:28512200 Sed13g1883 Sed-Chr13:23834491 4.30E-216 wgd
Sed13g1883 Sed-Chr13:23834491 Sed08g0887 Sed-Chr8:7428948 3.90E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80109 PF00069 Pkinase 2.30E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1883 K08790 - csv:101212228 1002.28