Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1883 | ATGGAGGATCGGAAGGAGGAAGAGAAGGCAGAAGAGGTGCAAGGTTCGAGTCTGACGATGGAGAAAGTGGCGGCAGCTAAGAAGCTTATAGAGAATCATTACAGAGCTCAGATGAAGAACATTCAAGAACGGAAGGAGAGACGATGGATGTTGGAAAGAAAGTTAGCCTCGTCGGATGTACCTAAGGAAGAACAGATCACACTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAGAGGCACAGGATTTGTGTTGATGATTTTGAGCTCTTAACCATCATTGGCAGGGGGGCATTTGGTGAGGTTCGATTATGTCGCGAGAAGAAATCTGGCGATATATATGCCATGAAAAAGTTGAAAAAATCAGAAATGCTTATGAGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCATTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCCGAGTACTTGTATTTGATCATGGAATATCTGCCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACATTGTCCGAAAATGTGGCTAAATTTTACATTGCGCAAAGTGTTCTTGCAATAGAATCTATTCACAAGCACAACTATATTCACAGGGATATTAAACCTGACAATCTTCTTTTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGTCTTTGTAAGCCACTGCATTCTTTGACCCTATCAGCACTACATGAAAATAAAGCCATGGATGATGACAATTTGGCAGAACCTATGGATATTGATGATAATAGGAGTAGTTGGAAGAGTCCCAGCGAACAGCTACACCATTGGCAAATGAACCGGAGGAAACTGGCATTTTCAACAGTCGGAACACCGGATTATATAGCTCCAGAAGTATTACTTAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTATGAGATGCTCGTAGGCTACCCTCCATTTTACGCCGATGATCCAATCTCCACCTGCAGAAAGATTGTTCATTGGAAAAACCACTTGAAGTTTCCAGAAGATGCTAAGTTGACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTTTGCGACGTTGAACATAGACTTGGTACTGGAGGAGCGTACCAAATTAAAGCTCATCCTTGGTTCAAAGATGTCGTCTGGGATAGACTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTCATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAGCGCGGCTCAGGACCCTCGAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACATACAAGAACTTCGATGCTGTCAAAGGGCTTCATGGATCACATGATTCTCAGAGATTGTCAATGGAACAGCCTCCAATTGACGTATTAAATGGCACTGGGGGAGACTACACAGCCGAACTTATCGCCAACGAGGCCGAAATGCAGATGCTAGCATTATCAGGAGACCCCATGTTGCCCTAG | 1548 | 42.96 | MEDRKEEEKAEEVQGSSLTMEKVAAAKKLIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQITLIKDLERKETEFMRLKRHRICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLSENVAKFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLHSLTLSALHENKAMDDDNLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYADDPISTCRKIVHWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGLHGSHDSQRLSMEQPPIDVLNGTGGDYTAELIANEAEMQMLALSGDPMLP | 515 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 23834491 | 23841957 | + | Sed0020728.1 | Sed13g1883 | 735393 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1883 | 515 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 394 | 467 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g1883 | 515 | Pfam | Protein kinase domain | 93 | 242 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g1883 | 515 | Pfam | Protein kinase domain | 284 | 393 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g1883 | 515 | CDD | STKc_NDR_like | 90 | 458 | - | - | |
Sed13g1883 | 515 | Gene3D | Phosphorylase Kinase; domain 1 | 83 | 177 | - | - | |
Sed13g1883 | 515 | FunFam | Non-specific serine/threonine protein kinase | 412 | 422 | - | - | |
Sed13g1883 | 515 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 211 | 223 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed13g1883 | 515 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 19 | 461 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Sed13g1883 | 515 | ProSitePatterns | Protein kinases ATP-binding region signature. | 98 | 121 | IPR017441 | GO:0005524(InterPro) | |
Sed13g1883 | 515 | Gene3D | Transferase(Phosphotransferase) domain 1 | 178 | 410 | - | - | |
Sed13g1883 | 515 | SUPERFAMILY | Protein kinase-like (PK-like) | 76 | 431 | IPR011009 | - | |
Sed13g1883 | 515 | SMART | pkinase_C_6 | 394 | 459 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g1883 | 515 | FunFam | Non-specific serine/threonine protein kinase | 292 | 411 | - | - | |
Sed13g1883 | 515 | SMART | serkin_6 | 92 | 393 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g1883 | 515 | ProSiteProfiles | Protein kinase domain profile. | 92 | 393 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g1883 | 515 | Pfam | Protein kinase C terminal domain | 412 | 457 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed13g1883 | 515 | FunFam | Non-specific serine/threonine protein kinase | 53 | 175 | - | - | |
Sed13g1883 | 515 | CDD | MobB_NDR_LATS-like | 26 | 87 | - | - | |
Sed13g1883 | 515 | FunFam | Non-specific serine/threonine protein kinase | 176 | 243 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g1997 | Sed-Chr8:34316100 | Sed13g1883 | Sed-Chr13:23834491 | 1.10E-71 | dispersed | |
Sed08g1998 | Sed-Chr8:34316100 | Sed13g1883 | Sed-Chr13:23834491 | 1.10E-71 | dispersed | |
Sed10g1254 | Sed-Chr10:27155025 | Sed13g1883 | Sed-Chr13:23834491 | 2.90E-164 | dispersed | |
Sed12g1748 | Sed-Chr12:28514315 | Sed13g1883 | Sed-Chr13:23834491 | 3.20E-196 | dispersed | |
Sed12g1913 | Sed-Chr12:30259913 | Sed13g1883 | Sed-Chr13:23834491 | 3.90E-53 | dispersed | |
Sed13g1883 | Sed-Chr13:23834491 | Sed14g1668 | Sed-Chr14:24779204 | 1.00E-177 | dispersed | |
Sed13g1883 | Sed-Chr13:23834491 | Sed13g1884 | Sed-Chr13:23834491 | 1.10E-277 | tandem | |
Sed11g1822 | Sed-Chr11:33038967 | Sed13g1883 | Sed-Chr13:23834491 | 1.30E-281 | wgd | |
Sed12g1747 | Sed-Chr12:28512200 | Sed13g1883 | Sed-Chr13:23834491 | 4.30E-216 | wgd | |
Sed13g1883 | Sed-Chr13:23834491 | Sed08g0887 | Sed-Chr8:7428948 | 3.90E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80109 | PF00069 | Pkinase | 2.30E-43 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1883 | K08790 | - | csv:101212228 | 1002.28 |