Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1884 ATGTTGGAAAGAAAGTTAGCCTCGTCGGATGTACCTAAGGAAGAACAGATCACACTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAGAGGCACAGGATTTGTGTTGATGATTTTGAGCTCTTAACCATCATTGGCAGGGGGGCATTTGGTGAGGTTCGATTATGTCGCGAGAAGAAATCTGGCGATATATATGCCATGAAAAAGTTGAAAAAATCAGAAATGCTTATGAGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCATTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCCGAGTACTTGTATTTGATCATGGAATATCTGCCAGGTGGAGATATGATGACTCTGCTTATGAGAGAAGACACATTGTCCGAAAATGTGGCTAAATTTTACATTGCGCAAAGTGTTCTTGCAATAGAATCTATTCACAAGCACAACTATATTCACAGGGATATTAAACCTGACAATCTTCTTTTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGTCTTTGTAAGCCACTGCATTCTTTGACCCTATCAGCACTACATGAAAATAAAGCCATGGATGATGACAATTTGGCAGAACCTATGGATATTGATGATAATAGGAGTAGTTGGAAGAGTCCCAGCGAACAGCTACACCATTGGCAAATGAACCGGAGGAAACTGGCATTTTCAACAGTCGGAACACCGGATTATATAGCTCCAGAAGTATTACTTAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTATGAGATGCTCGTAGGCTACCCTCCATTTTACGCCGATGATCCAATCTCCACCTGCAGAAAGATTGTTCATTGGAAAAACCACTTGAAGTTTCCAGAAGATGCTAAGTTGACAATTGAAGCAAAGGATCTCATTTGTAGGTTGCTTTGCGACGTTGAACATAGACTTGGTACTGGAGGAGCGTACCAAATTAAAGCTCATCCTTGGTTCAAAGATGTCGTCTGGGATAGACTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTCATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAGCGCGGCTCAGGACCCTCGAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACATACAAGAACTTCGATGCTGTCAAAGGGCTTCATGGATCACATGATTCTCAGAGATTGTCAATGGAACAGCCTCCAATTGACGTATTAAATGGCACTGGGGGAGACTACACAGCCGAACTTATCGCCAACGAGGCCGAAATGCAGATGCTAGCATTATCAGGAGACCCCATGTTGCCCTAG 1401 42.4 MLERKLASSDVPKEEQITLIKDLERKETEFMRLKRHRICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLSENVAKFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLHSLTLSALHENKAMDDDNLAEPMDIDDNRSSWKSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYADDPISTCRKIVHWKNHLKFPEDAKLTIEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGLHGSHDSQRLSMEQPPIDVLNGTGGDYTAELIANEAEMQMLALSGDPMLP 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23834491 23841957 + Sed0020728.2 Sed13g1884 735394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1884 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1884 466 Pfam Protein kinase domain 235 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1884 466 Pfam Protein kinase domain 44 193 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1884 466 ProSiteProfiles Protein kinase domain profile. 43 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1884 466 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 412 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Sed13g1884 466 SUPERFAMILY Protein kinase-like (PK-like) 27 382 IPR011009 -
Sed13g1884 466 ProSiteProfiles AGC-kinase C-terminal domain profile. 345 418 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1884 466 FunFam Non-specific serine/threonine protein kinase 363 373 - -
Sed13g1884 466 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524(InterPro)
Sed13g1884 466 CDD STKc_NDR_like 41 409 - -
Sed13g1884 466 SMART pkinase_C_6 345 410 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1884 466 Pfam Protein kinase C terminal domain 363 408 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1884 466 Gene3D Transferase(Phosphotransferase) domain 1 127 193 - -
Sed13g1884 466 Gene3D Transferase(Phosphotransferase) domain 1 243 364 - -
Sed13g1884 466 FunFam Non-specific serine/threonine protein kinase 243 362 - -
Sed13g1884 466 FunFam Non-specific serine/threonine protein kinase 127 194 - -
Sed13g1884 466 SMART serkin_6 43 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1884 466 Gene3D Phosphorylase Kinase; domain 1 8 126 - -
Sed13g1884 466 FunFam Non-specific serine/threonine protein kinase 4 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0887 Sed-Chr8:7428948 Sed13g1884 Sed-Chr13:23834491 1.90E-60 dispersed
Sed11g1822 Sed-Chr11:33038967 Sed13g1884 Sed-Chr13:23834491 2.60E-258 dispersed
Sed12g1747 Sed-Chr12:28512200 Sed13g1884 Sed-Chr13:23834491 2.10E-202 dispersed
Sed13g1884 Sed-Chr13:23834491 Sed14g1668 Sed-Chr14:24779204 1.80E-165 dispersed
Sed13g1883 Sed-Chr13:23834491 Sed13g1884 Sed-Chr13:23834491 1.10E-277 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80110 PF00069 Pkinase 1.90E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1884 K08790 - csv:101212228 925.235