Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1891 ATGAGATTAGATGCAGCTGAAGATGAATCAACTTCAGAAATTCATATTCCGGCAGAGATTGATTGGGATATGTTAGACAAATCCAAATTCTTTTTTCTGGGTGCTGCTTTATTTTCTGGTGTATCAACTGCTCTTTATCCAATTGTTGTTTTGAAAACTAGACTTCAGGTTTCTGCTACCAAGTTATCATGCTTTAATATGTCTTATTCTATACTGCAACGTGAAGGTTTAAGAGGGTTTTATAGAGGATTTGGAACCTCTTTAATGGGAACTATCCCGGCTCGAGCCTTTTACATGTCAGCTCTTGAAGTTACCAAGAGCTGCGTCGGTAGCGCGACGGTTAGGCTAGGTTTGTCGGACACCACAGCCATGGCTATAGCTAATGGAGCTGCAGGGTTGAGCTCTGCCATGGCTGCTCAATTGGTGTGGACTCCAATTGATGTTGTAAGCCAAAGACTAATGGTTCAGGGCTGTAATATCAGTGCTAACAACCGTGTTTCGTATCTTAATTCACGTGTCTATAGAAACGGGATCGATGCTTTTAGAAAGATTGTTTATGCCGATGGTTTTCGAGGATTGTACAGGGGATTTGGGATTTCAATCTTGACATATGCTCCATCAAATGCTGTTTGGTGGACTTCTTACTCTGTAGCTCATAGGCTCATTTGGAGTGGTTTAGGCTGCTACAATAATAAGAAGAATGAGAATTGTAATGATAATGGTGGATATGGTTATAAAGCTGATTCTAAGGCAACAATGGCTATTCAGGGGTTGAGTGCAGCCTTGGCTAGTGGGGTTTCTGCAATCATAACAATGCCATTGGATACCATCAAGACTAGATTGCAAGTTTTGGATGGAGAAGAAAACGGCCAAAGACGCCCTCTAACAGCAGTGCAGACCGTAAGGAATTTGGTGAAGGAAGGCGGGATGAATGCTTGTTACAGAGGGCTCGGGCCGAGGTGGGTGTCTATGGCCATGTCAGCCACGACCATGATCACAACCTACGAGTTTCTCAAACGACTATCTGCTAAGAATCAAGATTGTTTGAGATGA 1053 42.83 MRLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVSTALYPIVVLKTRLQVSATKLSCFNMSYSILQREGLRGFYRGFGTSLMGTIPARAFYMSALEVTKSCVGSATVRLGLSDTTAMAIANGAAGLSSAMAAQLVWTPIDVVSQRLMVQGCNISANNRVSYLNSRVYRNGIDAFRKIVYADGFRGLYRGFGISILTYAPSNAVWWTSYSVAHRLIWSGLGCYNNKKNENCNDNGGYGYKADSKATMAIQGLSAALASGVSAIITMPLDTIKTRLQVLDGEENGQRRPLTAVQTVRNLVKEGGMNACYRGLGPRWVSMAMSATTMITTYEFLKRLSAKNQDCLR 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23895993 23897045 + Sed0016825.1 Sed13g1891 735401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1891 350 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085(InterPro)
Sed13g1891 350 PRINTS Mitochondrial carrier protein signature 40 58 IPR002067 GO:0055085(InterPro)
Sed13g1891 350 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085(InterPro)
Sed13g1891 350 Gene3D Mitochondrial carrier domain 28 348 IPR023395 -
Sed13g1891 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Sed13g1891 350 SUPERFAMILY Mitochondrial carrier 23 338 IPR023395 -
Sed13g1891 350 Pfam Mitochondrial carrier protein 251 344 IPR018108 -
Sed13g1891 350 Pfam Mitochondrial carrier protein 126 222 IPR018108 -
Sed13g1891 350 Pfam Mitochondrial carrier protein 39 108 IPR018108 -
Sed13g1891 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 251 341 IPR018108 -
Sed13g1891 350 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 7 347 - -
Sed13g1891 350 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 221 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1891 Sed-Chr13:23895993 Sed14g1031 Sed-Chr14:19904375 3.20E-13 dispersed
Sed11g2055 Sed-Chr11:34532966 Sed13g1891 Sed-Chr13:23895993 1.20E-67 transposed
Sed12g0750 Sed-Chr12:4440256 Sed13g1891 Sed-Chr13:23895993 4.40E-65 transposed
Sed13g1891 Sed-Chr13:23895993 Sed09g1667 Sed-Chr9:40089232 2.40E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1891 K15121 - csv:101213436 608.601