Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1900 ATGGATTCGAACGGGAATAGACCTTCGCAACCCGTTCGAAGAAGTTCGTCTCGGAATGAAGGTGAAAATGAAATCCAAGTAGTAGTTGAAATCAGCAGTGTTGTGCCTTCCAAAGAAACCAGAGTTGAACATGGCTACTCAATACCGAACAAAACCAAAGAGCCAATGGGTTCGAGCACTGCCTATGGCTACGCTCCAACTGCGAACAAGCCCCCAGAAATCCTCAGTTCAACTAGAAAATCTCTCAAAAGATCATTCCTCTCCAAACCCAAATCCAGATTTGGAGAACAGCCATGTTACATGGATTCAGATATGTTTGAGGAGAATCATTCGCTGTTGAGAGATAAAACCGGTACAGCTTCGTTCGTACGCTCTGCTTCGAAAAAGGAACAACGCACGAAAGAAGAAGATGAGGAAATCTACCACGCAGAGGAGTTGAAGAAAAGGAAGCACAAAAAAGTGAAGGTAAGGACATTGATCAAATGGGTTGTATTTTTTTGCATCATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCCTTTGAAGAATTGCTATCTATGGGGTTTGAAGATTTGGAAATGGTGTTTGCTTGCTACTGTGACTTTGTGTGGAATGATAATAACTCATAGGGTTATGAATGTGATTGTGTTCTTGATTGAGAGGAACTTCTTGCTCAAGAAGAAAGTGTTTTACTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTCACCCTTTGGATGACATTGGTTCTCGTTACGTGGTGGTTGCTGTTCCATCGGAGTAGCCATCGGATTTTGAGATCGAAGACCACTCAGAAGATCTTGGATGCTGTTACATGGACACTGGTAACTCTTTTAATAGGGTCAATTTTGTGGTTGGTGAAGACATTGTCATTGAAAATACTGGCGTCCAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGACTCTATTTTCCATCATCATGTTCTTCAAATCCTCTTGAGCAACCCATTAATGGGTATGACTGAAACTACTGCTGGGTCCAAAAGGGGAAGATTGAGTTTCAAGGGTAAGAAATCAGACCATAAGAAGGTCATTGACATGGGAAAGATCGAACAGCTGAACCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTGTTGGTCGATGCAATTACGAGTACTGAGTTGTCGATCTCGCAACTACTCGACGAAAGCTACTGTGAAAATGTCGCTGATGGTGCAATCGCAGATGAGATGGAATGTGCCAGATATGCTGCCTACAAGATCTTCAACAATATTGCTCTTCCTGGAAACAAGTTCATAGAGCCCGAGGATCTTCTGAAAGTCATGATCGAAGAAGAAGTTGAACTTGTTTTACCACTCTTTGGGGTAGATGAGACCAGGAAGATTGACATGAAAACTCTAACAAATTGGGTGGTCAAGGTTTACCACGAGAGGAAAACACTAGCACATGCCTTGAAAGACACTAAAACAGCCGTAAAACAGTTGAATAGCTTAGTATCAGTGCTTATTATAATAGCCACAACTATTATTTGGCTTCTGTTAATGGAAATAGCTACAACCAAAGTACTTCTTTTCCTTCTATCTCAATTTGCAGTGGCAGCTTTCATGTTCGGAAACACTTGCAAGACGATATTCGAAGCTCTAATCTTCGTGTTTGTTATGCACCCATTTGATGTCGGAGACCGTTGTTCTGTCGATGGCATCCCGATGTTGGTTGAAGAAATGAACATCTTGACAACAGTTTTCTTGAAATTCTCCAATGAGAAGGTGTATTTTCCCAACTCAGTTTTATCAACAAAGTCCATCACTAATTACTACAGAAGTGCAGACATGTGGGACACGGTCGAATTCTCTATCGGTTTCACCACGCCACTCGAGAGGATCGGGGTCATGAAAGAGCGAATAAAGAGGTATTTGGAGAAGAATCCACAACACTGGTATCCAAACCATACTGTACAGGTGAAGGAGATTGAAGACTTGAATAAGTTAAAGATGTCTCTTTCTGTGTACCACACCATGAATTTCCAAGATTGGATTGAGAAGAGTCGTCGAAGATCCGAGCTCGTGATGGAGGTGAAGATAATTTTGGAAGAACTGAAGATCAGCTACAATCTCCTGCATCAAACAGTTCATCTCTTCCCGGTCGAGGTGCGCTGA 2163 42.07 MDSNGNRPSQPVRRSSSRNEGENEIQVVVEISSVVPSKETRVEHGYSIPNKTKEPMGSSTAYGYAPTANKPPEILSSTRKSLKRSFLSKPKSRFGEQPCYMDSDMFEENHSLLRDKTGTASFVRSASKKEQRTKEEDEEIYHAEELKKRKHKKVKVRTLIKWVVFFCIIGCLVASLTVNPLKNCYLWGLKIWKWCLLATVTLCGMIITHRVMNVIVFLIERNFLLKKKVFYFVHGLKKSVQVTLWMTLVLVTWWLLFHRSSHRILRSKTTQKILDAVTWTLVTLLIGSILWLVKTLSLKILASKFHMNRFFDRIQDSIFHHHVLQILLSNPLMGMTETTAGSKRGRLSFKGKKSDHKKVIDMGKIEQLNREKVSAWTMKVLVDAITSTELSISQLLDESYCENVADGAIADEMECARYAAYKIFNNIALPGNKFIEPEDLLKVMIEEEVELVLPLFGVDETRKIDMKTLTNWVVKVYHERKTLAHALKDTKTAVKQLNSLVSVLIIIATTIIWLLLMEIATTKVLLFLLSQFAVAAFMFGNTCKTIFEALIFVFVMHPFDVGDRCSVDGIPMLVEEMNILTTVFLKFSNEKVYFPNSVLSTKSITNYYRSADMWDTVEFSIGFTTPLERIGVMKERIKRYLEKNPQHWYPNHTVQVKEIEDLNKLKMSLSVYHTMNFQDWIEKSRRRSELVMEVKIILEELKISYNLLHQTVHLFPVEVR 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23956012 23958670 + Sed0005471.1 Sed13g1900 735410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1900 720 MobiDBLite consensus disorder prediction 1 74 - -
Sed13g1900 720 FunFam Predicted mechanosensitive ion channel 558 607 - -
Sed13g1900 720 MobiDBLite consensus disorder prediction 52 74 - -
Sed13g1900 720 Pfam Mechanosensitive ion channel, beta-domain 551 608 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed13g1900 720 SUPERFAMILY Sm-like ribonucleoproteins 548 607 IPR010920 -
Sed13g1900 720 PIRSF Memb_At2g17000 2 718 IPR016688 -
Sed13g1900 720 Gene3D - 558 607 IPR023408 -
Sed13g1900 720 MobiDBLite consensus disorder prediction 1 16 - -
Sed13g1900 720 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 54 714 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1788 Sed-Chr5:31480495 Sed13g1900 Sed-Chr13:23956012 1.80E-182 dispersed
Sed13g1897 Sed-Chr13:23932914 Sed13g1900 Sed-Chr13:23956012 1.10E-270 dispersed
Sed13g1899 Sed-Chr13:23944747 Sed13g1900 Sed-Chr13:23956012 1.70E-231 tandem
Sed13g1900 Sed-Chr13:23956012 Sed13g1901 Sed-Chr13:23966687 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1900 K22048 - csv:101217197 909.442