Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1900 ATGGATTCGAACGGGAATAGACCTTCGCAACCCGTTCGAAGAAGTTCGTCTCGGAATGAAGGTGAAAATGAAATCCAAGTAGTAGTTGAAATCAGCAGTGTTGTGCCTTCCAAAGAAACCAGAGTTGAACATGGCTACTCAATACCGAACAAAACCAAAGAGCCAATGGGTTCGAGCACTGCCTATGGCTACGCTCCAACTGCGAACAAGCCCCCAGAAATCCTCAGTTCAACTAGAAAATCTCTCAAAAGATCATTCCTCTCCAAACCCAAATCCAGATTTGGAGAACAGCCATGTTACATGGATTCAGATATGTTTGAGGAGAATCATTCGCTGTTGAGAGATAAAACCGGTACAGCTTCGTTCGTACGCTCTGCTTCGAAAAAGGAACAACGCACGAAAGAAGAAGATGAGGAAATCTACCACGCAGAGGAGTTGAAGAAAAGGAAGCACAAAAAAGTGAAGGTAAGGACATTGATCAAATGGGTTGTATTTTTTTGCATCATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCCTTTGAAGAATTGCTATCTATGGGGTTTGAAGATTTGGAAATGGTGTTTGCTTGCTACTGTGACTTTGTGTGGAATGATAATAACTCATAGGGTTATGAATGTGATTGTGTTCTTGATTGAGAGGAACTTCTTGCTCAAGAAGAAAGTGTTTTACTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTCACCCTTTGGATGACATTGGTTCTCGTTACGTGGTGGTTGCTGTTCCATCGGAGTAGCCATCGGATTTTGAGATCGAAGACCACTCAGAAGATCTTGGATGCTGTTACATGGACACTGGTAACTCTTTTAATAGGGTCAATTTTGTGGTTGGTGAAGACATTGTCATTGAAAATACTGGCGTCCAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGACTCTATTTTCCATCATCATGTTCTTCAAATCCTCTTGAGCAACCCATTAATGGGTATGACTGAAACTACTGCTGGGTCCAAAAGGGGAAGATTGAGTTTCAAGGGTAAGAAATCAGACCATAAGAAGGTCATTGACATGGGAAAGATCGAACAGCTGAACCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTGTTGGTCGATGCAATTACGAGTACTGAGTTGTCGATCTCGCAACTACTCGACGAAAGCTACTGTGAAAATGTCGCTGATGGTGCAATCGCAGATGAGATGGAATGTGCCAGATATGCTGCCTACAAGATCTTCAACAATATTGCTCTTCCTGGAAACAAGTTCATAGAGCCCGAGGATCTTCTGAAAGTCATGATCGAAGAAGAAGTTGAACTTGTTTTACCACTCTTTGGGGTAGATGAGACCAGGAAGATTGACATGAAAACTCTAACAAATTGGGTGGTCAAGGTTTACCACGAGAGGAAAACACTAGCACATGCCTTGAAAGACACTAAAACAGCCGTAAAACAGTTGAATAGCTTAGTATCAGTGCTTATTATAATAGCCACAACTATTATTTGGCTTCTGTTAATGGAAATAGCTACAACCAAAGTACTTCTTTTCCTTCTATCTCAATTTGCAGTGGCAGCTTTCATGTTCGGAAACACTTGCAAGACGATATTCGAAGCTCTAATCTTCGTGTTTGTTATGCACCCATTTGATGTCGGAGACCGTTGTTCTGTCGATGGCATCCCGATGTTGGTTGAAGAAATGAACATCTTGACAACAGTTTTCTTGAAATTCTCCAATGAGAAGGTGTATTTTCCCAACTCAGTTTTATCAACAAAGTCCATCACTAATTACTACAGAAGTGCAGACATGTGGGACACGGTCGAATTCTCTATCGGTTTCACCACGCCACTCGAGAGGATCGGGGTCATGAAAGAGCGAATAAAGAGGTATTTGGAGAAGAATCCACAACACTGGTATCCAAACCATACTGTACAGGTGAAGGAGATTGAAGACTTGAATAAGTTAAAGATGTCTCTTTCTGTGTACCACACCATGAATTTCCAAGATTGGATTGAGAAGAGTCGTCGAAGATCCGAGCTCGTGATGGAGGTGAAGATAATTTTGGAAGAACTGAAGATCAGCTACAATCTCCTGCATCAAACAGTTCATCTCTTCCCGGTCGAGGTGCGCTGA 2163 42.07 MDSNGNRPSQPVRRSSSRNEGENEIQVVVEISSVVPSKETRVEHGYSIPNKTKEPMGSSTAYGYAPTANKPPEILSSTRKSLKRSFLSKPKSRFGEQPCYMDSDMFEENHSLLRDKTGTASFVRSASKKEQRTKEEDEEIYHAEELKKRKHKKVKVRTLIKWVVFFCIIGCLVASLTVNPLKNCYLWGLKIWKWCLLATVTLCGMIITHRVMNVIVFLIERNFLLKKKVFYFVHGLKKSVQVTLWMTLVLVTWWLLFHRSSHRILRSKTTQKILDAVTWTLVTLLIGSILWLVKTLSLKILASKFHMNRFFDRIQDSIFHHHVLQILLSNPLMGMTETTAGSKRGRLSFKGKKSDHKKVIDMGKIEQLNREKVSAWTMKVLVDAITSTELSISQLLDESYCENVADGAIADEMECARYAAYKIFNNIALPGNKFIEPEDLLKVMIEEEVELVLPLFGVDETRKIDMKTLTNWVVKVYHERKTLAHALKDTKTAVKQLNSLVSVLIIIATTIIWLLLMEIATTKVLLFLLSQFAVAAFMFGNTCKTIFEALIFVFVMHPFDVGDRCSVDGIPMLVEEMNILTTVFLKFSNEKVYFPNSVLSTKSITNYYRSADMWDTVEFSIGFTTPLERIGVMKERIKRYLEKNPQHWYPNHTVQVKEIEDLNKLKMSLSVYHTMNFQDWIEKSRRRSELVMEVKIILEELKISYNLLHQTVHLFPVEVR 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23956012 23958670 + Sed0005471.1 Sed13g1900 735410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1900 720 MobiDBLite consensus disorder prediction 1 74 - -
Sed13g1900 720 FunFam Predicted mechanosensitive ion channel 558 607 - -
Sed13g1900 720 MobiDBLite consensus disorder prediction 52 74 - -
Sed13g1900 720 Pfam Mechanosensitive ion channel, beta-domain 551 608 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed13g1900 720 SUPERFAMILY Sm-like ribonucleoproteins 548 607 IPR010920 -
Sed13g1900 720 PIRSF Memb_At2g17000 2 718 IPR016688 -
Sed13g1900 720 Gene3D - 558 607 IPR023408 -
Sed13g1900 720 MobiDBLite consensus disorder prediction 1 16 - -
Sed13g1900 720 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 54 714 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1900 K22048 - - csv:101217197 909.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1788 Sed-Chr5:31480495 Sed13g1900 Sed-Chr13:23956012 1.80E-182 dispersed
Sed13g1897 Sed-Chr13:23932914 Sed13g1900 Sed-Chr13:23956012 1.10E-270 dispersed
Sed13g1899 Sed-Chr13:23944747 Sed13g1900 Sed-Chr13:23956012 1.70E-231 tandem
Sed13g1900 Sed-Chr13:23956012 Sed13g1901 Sed-Chr13:23966687 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g0157 . 153 541 Mechanosensitive Ion Channel Family AT4G00290 66.8 1.0e-150 531.2
Sed12g0158 . 153 398 Mechanosensitive Ion Channel Family AT4G00290 65.9 8.6e-89 325.5
Sed13g1078 . 9 725 Mechanosensitive Ion Channel Family AT5G10490 55.7 1.6e-194 677.2
Sed13g1077 . 9 725 Mechanosensitive Ion Channel Family AT5G10490 55.7 1.6e-194 677.2
Sed13g1079 . 9 725 Mechanosensitive Ion Channel Family AT5G10490 55.7 1.6e-194 677.2
Sed04g0205 . 15 663 Mechanosensitive Ion Channel Family AT5G10490 58.4 1.1e-192 671.0
Sed03g1409 . 27 706 Mechanosensitive Ion Channel Family AT5G10490 55.6 3.3e-192 669.5
Sed03g1410 . 27 710 Mechanosensitive Ion Channel Family AT5G10490 55.3 1.8e-190 663.7
Sed04g0205 . 15 661 Mechanosensitive Ion Channel Family AT1G58200 55.9 1.6e-194 677.2
Sed03g1409 . 10 686 Mechanosensitive Ion Channel Family AT1G58200 54.5 4.2e-187 652.5
Sed03g1410 . 10 690 Mechanosensitive Ion Channel Family AT1G58200 54.2 2.3e-185 646.7
Sed13g1078 . 52 690 Mechanosensitive Ion Channel Family AT1G58200 54.3 5.9e-173 605.5
Sed13g1077 . 52 690 Mechanosensitive Ion Channel Family AT1G58200 54.3 5.9e-173 605.5
Sed13g1079 . 52 690 Mechanosensitive Ion Channel Family AT1G58200 54.3 5.9e-173 605.5
Sed05g3519 . 41 903 Mechanosensitive Ion Channel Family AT1G53470 56.7 2.9e-265 912.5
Sed01g0647 . 45 883 Mechanosensitive Ion Channel Family AT1G53470 55.0 1.1e-251 867.5
Sed04g3825 . 76 916 Mechanosensitive Ion Channel Family AT1G53470 51.0 8.0e-231 798.1
Sed05g2203 . 63 907 Mechanosensitive Ion Channel Family AT1G53470 50.2 4.4e-229 792.3
Sed05g3520 . 41 645 Mechanosensitive Ion Channel Family AT1G53470 52.1 1.7e-156 551.2
Sed05g3519 . 41 898 Mechanosensitive Ion Channel Family AT3G14810 52.5 4.7e-236 815.5
Sed01g0647 . 68 878 Mechanosensitive Ion Channel Family AT3G14810 54.7 3.1e-232 802.7
Sed05g3519 . 49 903 Mechanosensitive Ion Channel Family AT1G78610 58.8 6.3e-273 937.9
Sed01g0647 . 49 883 Mechanosensitive Ion Channel Family AT1G78610 57.4 1.6e-268 923.3
Sed05g2203 . 62 913 Mechanosensitive Ion Channel Family AT1G78610 54.4 1.4e-251 867.1
Sed04g3825 . 68 915 Mechanosensitive Ion Channel Family AT1G78610 54.5 2.0e-247 853.2
Sed01g2461 . 112 689 Mechanosensitive Ion Channel Family AT1G78610 50.6 6.3e-164 575.9
Sed05g3520 . 49 645 Mechanosensitive Ion Channel Family AT1G78610 53.9 2.9e-161 567.0
Sed05g3519 . 193 899 Mechanosensitive Ion Channel Family AT2G17000 60.4 3.1e-232 802.7
Sed01g0647 . 191 879 Mechanosensitive Ion Channel Family AT2G17000 61.1 1.1e-229 794.3
Sed05g2203 . 165 902 Mechanosensitive Ion Channel Family AT2G17000 54.6 1.4e-216 750.7
Sed04g3825 . 248 917 Mechanosensitive Ion Channel Family AT2G17000 56.9 9.8e-210 728.0
Sed05g3520 . 193 645 Mechanosensitive Ion Channel Family AT2G17000 57.2 1.1e-131 468.8
Sed05g2203 . 4 656 Mechanosensitive Ion Channel Family AT2G17010 50.5 4.3e-160 562.8
Sed05g3519 . 1 642 Mechanosensitive Ion Channel Family AT2G17010 50.9 2.1e-154 543.9
Sed05g3520 . 1 642 Mechanosensitive Ion Channel Family AT2G17010 50.9 2.1e-154 543.9
Sed01g0647 . 1 622 Mechanosensitive Ion Channel Family AT2G17010 50.1 2.4e-150 530.4
Sed05g1786 . 77 728 Mechanosensitive Ion Channel Family AT5G19520 51.1 1.3e-178 624.4
Sed05g1787 . 77 728 Mechanosensitive Ion Channel Family AT5G19520 51.1 1.3e-178 624.4
Sed05g1789 . 77 728 Mechanosensitive Ion Channel Family AT5G19520 51.1 1.3e-178 624.4
Sed08g0903 . 60 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 2.7e-200 696.4
Sed08g0904 . 60 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 2.7e-200 696.4
Sed08g0905 . 60 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 2.7e-200 696.4
Sed12g1723 . 48 732 Mechanosensitive Ion Channel Family AT5G12080 53.7 8.0e-200 694.9
Sed05g1786 . 72 728 Mechanosensitive Ion Channel Family AT5G12080 55.0 4.0e-191 666.0
Sed05g1787 . 72 728 Mechanosensitive Ion Channel Family AT5G12080 55.0 4.0e-191 666.0
Sed05g1789 . 72 728 Mechanosensitive Ion Channel Family AT5G12080 55.0 4.0e-191 666.0
Sed13g1901 . 69 714 Mechanosensitive Ion Channel Family AT5G12080 53.8 2.3e-183 640.2
Sed13g1900 . 69 714 Mechanosensitive Ion Channel Family AT5G12080 52.4 1.0e-175 614.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57