Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1901 ATGGATTCGAATGGGAATAAACCTTCGAAACCCGTTCGAAGAAGTTCGTCTCCAAATGAAGATGGAAATGGAAGCCAAGTAGTAGTTGAAATCAGCAGCGTTGTGCCTTCCAAAGAAACCAGAGATGAAAATGACTTCTCCATACCGAACCAAACCAAAGAACCAGTGGATTTGAGTACTGCCTATGGCTACGCACCGACTGCGAACAAGCCCCCAAACATTCTCGGTTCAACTAGAAAATCTCTCAAAAGATCAGTCCTCTCCAAACCCAAATCCAGATTCGGAGAACAGTCATCTTACATGGATTCAGATATGATTGAGGAGAATCATTCGCCATTGAGAGATCAAACCAGTGCAGCTTCGATCGTACGCTCTACTTCGAAAAAGGAACAACGCACGAAAGAAGAAGACGAGGAAATCTACCACACAGAGGAGTTGAAGAAAAGGAAGCACAAAAAAGTGAAGGTAAGGACATTGATCAAATGGGTTGTATTTTTTTGCATCATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCCTTTGAAGAATTGCTATCTATGGGGTCTGAAGATTTGGAAATGGTGTTTGCTTGCTACTGTGACTTTGTGTGGAATGATAATAACTCATAAGGTTATGAATGTGATTGTGTTCTTGATTGAGAAGAACTTCTTGCTCAAGAAGAAAGTGTTTTACTTTGTTCATGGGTTGAAGAAGAGTGTCCGAGTCACCCTTTGGTTGACATTGGTTTTCGTTACATGGTTGTTGTTGTTCGATCGCAGTAGCCATCGGAATTTGAGATCGAAGACCACTCGGAAGATCTTGGATGTTGTTACATGGACACTGGTAACTCTTTTAATAGGGTCATTTTTGTGGTTGGTGAAGACATTGTCGCTGAAAATACTAGCATCCAAGTTCCATATGAACCGATTTTTTGACAGAATTCAGGATTCTATTTACCATCATCATGTTCTTCAAACCCTCTTGAGCAATCCATTAATGAGTATGACTGAAAGTACTGCCGGGTCCAAAAGGGGAAGATTGAGTTTCAAGAGTAAGAAATCAGAACATAAAAAGGTCATTGACATGGGAAAGATCGAACAGTTGAACCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTGTTGGTCGATGCAATTACGAGTTCTGAGATGTCGATCTCGCAACTACTCGATGAAAGCTACTACGAAAATGTCGCTGATGGTGCGATCGCAGATGAGATGGAATGTGCCAGATATGCTGCCTACAAGATCTTCAACAATATTGCTCTTCCTGGAAACAAGTTCATAGAGCCAGAGGATCTTCTGAAAGTCATGATCGAAGAAGAAGTTGAACTTGTGTTGCCACTCTTTGGGGTAGATGAGACAAGGAAGATCGACAGAAAAGCTCTAACAAATTGGGTGGTCAAGGTTTACCAAGAGAGGAAAACACTAGCACATGCCTTGAAAGACACTAAAACCGCCGTGAAGCAGTTGAATAACTTAGTATCAGTGCTTATTATGATAGCCACAGCTATTATTTGGCTTCTGTTGATGGAAATAGCTACAACCAAAGTACTTCTGTTCCTTCTATCTCAATTTGCAGTGGCAGCTTTCATGTTTGGAAACACTTGCAAGACGATATTCGAAGCTCTAATCTTCGTGTTTGTTATGCACCCATTTGATGTCGGGGACCGTTGTTCTGTCGATGGCATCCCGATGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCACCAATGAGAAGGTGTATTTTCCCAACTCAGTTTTGGCGACAAAGTCCATCGTTAATTACTACAGAAGTCCAGACATGTTGGACATAATCGAATTCTCCATCGGTTTCACTACGCCACTCGAGAGGATCGGGGTCATGAAAGAGAGAATAAAGAGGTATTTGGAGAAGAATCCACAACACTGGTATCCAAAGCATAGTGTGGTAGTGAATGAGATTGAAAATGTGAATAAGATAAAGATGATTCTTTATGTGACCCATACCATGAATTTCCAAGATTGGGCTGAGAAGAATCGTCGAAGATCCGAGCTCGTGATGGAGTTGAAGACAATTTTCGAAGAACTGAATATCAGCTACAATCTCCTGCCTCAAACAGTTCATCTCTTGCCGGTTGAGGGGCGCTGA 2163 41.7 MDSNGNKPSKPVRRSSSPNEDGNGSQVVVEISSVVPSKETRDENDFSIPNQTKEPVDLSTAYGYAPTANKPPNILGSTRKSLKRSVLSKPKSRFGEQSSYMDSDMIEENHSPLRDQTSAASIVRSTSKKEQRTKEEDEEIYHTEELKKRKHKKVKVRTLIKWVVFFCIIGCLVASLTVNPLKNCYLWGLKIWKWCLLATVTLCGMIITHKVMNVIVFLIEKNFLLKKKVFYFVHGLKKSVRVTLWLTLVFVTWLLLFDRSSHRNLRSKTTRKILDVVTWTLVTLLIGSFLWLVKTLSLKILASKFHMNRFFDRIQDSIYHHHVLQTLLSNPLMSMTESTAGSKRGRLSFKSKKSEHKKVIDMGKIEQLNREKVSAWTMKVLVDAITSSEMSISQLLDESYYENVADGAIADEMECARYAAYKIFNNIALPGNKFIEPEDLLKVMIEEEVELVLPLFGVDETRKIDRKALTNWVVKVYQERKTLAHALKDTKTAVKQLNNLVSVLIMIATAIIWLLLMEIATTKVLLFLLSQFAVAAFMFGNTCKTIFEALIFVFVMHPFDVGDRCSVDGIPMLVEEMNILTTVFLKLTNEKVYFPNSVLATKSIVNYYRSPDMLDIIEFSIGFTTPLERIGVMKERIKRYLEKNPQHWYPKHSVVVNEIENVNKIKMILYVTHTMNFQDWAEKNRRRSELVMELKTIFEELNISYNLLPQTVHLLPVEGR 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23966687 23969943 + Sed0015215.1 Sed13g1901 735411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1901 720 Gene3D - 558 607 IPR023408 -
Sed13g1901 720 MobiDBLite consensus disorder prediction 112 126 - -
Sed13g1901 720 MobiDBLite consensus disorder prediction 1 33 - -
Sed13g1901 720 Pfam Mechanosensitive ion channel, beta-domain 551 608 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed13g1901 720 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 63 714 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Sed13g1901 720 MobiDBLite consensus disorder prediction 91 105 - -
Sed13g1901 720 SUPERFAMILY Sm-like ribonucleoproteins 548 607 IPR010920 -
Sed13g1901 720 FunFam Predicted mechanosensitive ion channel 558 607 - -
Sed13g1901 720 PIRSF Memb_At2g17000 2 718 IPR016688 -
Sed13g1901 720 MobiDBLite consensus disorder prediction 1 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1789 Sed-Chr5:31481104 Sed13g1901 Sed-Chr13:23966687 3.80E-303 dispersed
Sed12g1723 Sed-Chr12:28408983 Sed13g1901 Sed-Chr13:23966687 7.90E-171 dispersed
Sed13g1898 Sed-Chr13:23944747 Sed13g1901 Sed-Chr13:23966687 1.20E-242 dispersed
Sed13g1899 Sed-Chr13:23944747 Sed13g1901 Sed-Chr13:23966687 1.20E-242 dispersed
Sed13g1900 Sed-Chr13:23956012 Sed13g1901 Sed-Chr13:23966687 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1901 K22048 - csv:101217197 943.34