Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1910 ATGCCATTAATTTCTAGAGTTTTAAGACTCAATCCTGCAGTACTCAAATGGGTTCCTTCCATAAACCCATCCCTGCAAAAGAAAAAGAAAAAAAAAAGTAAAAAAATTGAAAACTCTTCACAAAGAATTGAAAAGGACCCATTTTGCAAATGTAGAGAGAGAGAAAAATGGAGTGAAGGGGGGTTTTCATGGTGGTGTAAAATGAAGCCTGTAATGAAGAGGGCAGCCATGGAATTTCCTGTTCAGCTTGTTGTTTTGGGTTTTCTCTTCTTTGCCAGTGTTGCTGTGGTGGATTCTGATGATGGAACTACATTGTTGGACATAAAGAAATCATTTAGGGATGTGGATAATGTTCTTTATGATTGGACAAGCTCACCTTCTTCAGACTACTGTATTTGGAGAGGTGTCACTTGTGACAATGCCACCCTCAATGTTATCGCTCTTAATCTTTCAGGTCTCAATCTGGATGGGGAAATTTCTCCTTCGGTTGGTAACCTCAAGGGCCTGCAAACTTTGGACTTCAGGGGGAATAGTCTTTCTGGGCAAATTCCAGATGAGATTGGTGACTGCTCATCCTTGATAAATCTGGATTTATCGTTTAATGCAATTTATGGCGACATTCCGTTTTCTGTTTCGAAGTTGAAGCAATTGGAAATGCTAGTTCTGAAAAATAATCGGCTTATTGGACCGATCCCATCGACATTATCTCAGATTCCGAACTTGAAGGTTTTAGATCTTGCACAGAATAATCTTAGTGGGGAAATACCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTTTGCGAGGCAACAACTTGGTAGGCACACTCTCTCCAGATATGTGTCAGCTCACTGGTTTATGGTATTTTGATGTGAGAAACAACAGTTTAACTGGCAGCATACCTCAAACCATAGGCAACTGCACATCCTTCCAGGTCTTGGACCTGTCATACAATCATTTTACTGGAGAGATACCATTCAATATTGGTTTCCTTCAAGTGGCCACATTGTCCCTACAGAGTAATCAGTTGTCAGGTCCCATCCCACCAGTGATAGGTCTGATGCAGGCACTTGCTGTGCTAGATTTGAGCTGCAACATGTTAACTGGTCCAATCCCCTCTATATTAGGGAATCTGACTTACACTGAGAAACTGTACTTGCATAGTAACAAGCTCACTGGGTCCATTCCGGCCGAGCTTGGGAACATGACGAAGCTTCATTATCTGGAACTGAATGATAATAATCTCACTGGAAATATTCCAGCTGAGCTTGGGAAACTCACCGATCTGTTTGATCTAAATGTTGCTAATAACAATCTTGGAGGGCCTATTCCTGATAATCTTAGCTCATGCAGAAATCTCAACAGCTTAAATGTGCATGGAAACAAGTTGAATGGAATGATTCCGTTGTCTTTCCAGAGGCTAGAGAGTATGACTTACCTAAATCTCTCCTCGAACAATCTACGAGGTCCGATTCCAGTTGAGCTGTCTCGTATTGGCAATTTGGATACGTTAGACATCTCAAATAACAAAGTCACTGGCACAATATCTTCATCCTTTGGTGATCTGGAGCATCTCCTAAAGCTAAATTTAAGCAGGAATCATTTAACAGGAATTATTCCAGTTGAATTTGGCAATCTAAGGAGTGTAATGGAAATAGATATTTCACACAATCAGCTCTCTGGGTTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTGCTCTCCTTGAGACTCGAAAACAACAATTTATCTGGGGACGTGACGTCGCTGATCAACTGCGTAACCCTTACTGAGTTAAACGTATCTTATAACAATCTAGCTGGTGACATTCCCACAAGCAACAACTTTTCAAGGTTTACATCTGACAGTTTCCTTGGAAATCTTGCTCTCTGTGGATATTGGAATAGCGACAACTATCCCTGTCGCGAAGTTCGTACAACAGATCGAGTGACAATATCTAAAGCTGCTATTCTGGGAATTGTTCTTGGTGCCTTTGTAATTCTTCTAATGATCCTCCTAACGGTGTGCCGTCCAAACAACACGATACCTTTCCCGGACGGAACGCTTGATAAACCAGTTACTTACTCAACTCCCAAGCTAGTTATCCTTCACATGAACATGGCACTTCACGTGTATGAGGATATCATGAGGATGACTGAAAATTTGAGCGAAAAGTACATAATCGGACATGGAGCTTCGAGCACAGTCTACAAATGTGTACTAAAGAATTGCAAACCTGTGGCTATCAAAAAGCTCTACTCCCACCAGCCCCTAAGCATGAAGGCATTCGAGACCGAACTCGAAACTGTCGGTAGCATCAAGCACAGAAATCTTGTCATCCTTCAAGGATATTCCTTGTCTCCCTCTGGCAATCTCCTCTTCTATGATTACATGGAAAATGGCAGTCTTTGGGATCATTTGCATGGTTCAACCTGTACGAAGAAGAAAAAACTCGACTGGGACGTTCGGCTTAATATTGCACATGGGGCAGCTCAAGGACTATCATATTTACACCATGATTGTAGCCCTCGCATTATCCACAGAGATGTCAAGTCATCAAACATTCTTTTAGACAAGGATTTTGAAGCTCATCTCACTGATTTCGGCATTGCCAAGGTTTTATGCACCTCGAAGACATATACGTCCACTTATATCATGGGAACCATTGGATACATTGACCCAGAGTATGCTCGGACTTCCCGACTTACTGAGAAGTCCGATGTCTACAGCTTTGGCATTGTGTTACTTGAATTGCTCACCGGAAGGAAAGCTGTGGATGATGAATCTAATCTCCACCATTTGATCTTATCAAAGACAGCCAACAATGCAGTAATGGAAACAGTTGATCCTGAAATAACTGCAACTTGCAAGGACCTAGGAGCTGTAAAGAAAGCTTTTCAGCTTGCTCTACTATGCACCAAGAGGCAGCCAACTGATCGGCCAACAATGCACGAAGTGACGCGCGTCATCGATAGTCTCCTGCCCTCTGCTGCCACACCACTAAAGCCAACATTAACCACAACATCCCTGCCCCCATCTGCAAAAGTCCCATGCTACAGGGACGAGTACGCCAATCTAAAAACGCCGCACTTGCTGAACTGCCCGTCCATGAGCACCTCAGACGCCCAGCTCTTCCTCAAGTTTGGAGAAGTCATATCCCAAAACAGTGAGTAA 3183 42.51 MPLISRVLRLNPAVLKWVPSINPSLQKKKKKKSKKIENSSQRIEKDPFCKCREREKWSEGGFSWWCKMKPVMKRAAMEFPVQLVVLGFLFFASVAVVDSDDGTTLLDIKKSFRDVDNVLYDWTSSPSSDYCIWRGVTCDNATLNVIALNLSGLNLDGEISPSVGNLKGLQTLDFRGNSLSGQIPDEIGDCSSLINLDLSFNAIYGDIPFSVSKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGSIPQTIGNCTSFQVLDLSYNHFTGEIPFNIGFLQVATLSLQSNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNNLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCRNLNSLNVHGNKLNGMIPLSFQRLESMTYLNLSSNNLRGPIPVELSRIGNLDTLDISNNKVTGTISSSFGDLEHLLKLNLSRNHLTGIIPVEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLLSLRLENNNLSGDVTSLINCVTLTELNVSYNNLAGDIPTSNNFSRFTSDSFLGNLALCGYWNSDNYPCREVRTTDRVTISKAAILGIVLGAFVILLMILLTVCRPNNTIPFPDGTLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGHGASSTVYKCVLKNCKPVAIKKLYSHQPLSMKAFETELETVGSIKHRNLVILQGYSLSPSGNLLFYDYMENGSLWDHLHGSTCTKKKKLDWDVRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKVLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDDESNLHHLILSKTANNAVMETVDPEITATCKDLGAVKKAFQLALLCTKRQPTDRPTMHEVTRVIDSLLPSAATPLKPTLTTTSLPPSAKVPCYRDEYANLKTPHLLNCPSMSTSDAQLFLKFGEVISQNSE 1060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24071046 24079720 + Sed0027958.1 Sed13g1910 735420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1910 1060 SUPERFAMILY L domain-like 99 334 - -
Sed13g1910 1060 Gene3D Ribonuclease Inhibitor 262 376 IPR032675 -
Sed13g1910 1060 Gene3D Ribonuclease Inhibitor 98 261 IPR032675 -
Sed13g1910 1060 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 801 1003 - -
Sed13g1910 1060 Gene3D Ribonuclease Inhibitor 387 651 IPR032675 -
Sed13g1910 1060 SMART LRR_typ_2 405 429 IPR003591 -
Sed13g1910 1060 SMART LRR_typ_2 286 310 IPR003591 -
Sed13g1910 1060 SMART LRR_typ_2 166 190 IPR003591 -
Sed13g1910 1060 SMART LRR_typ_2 525 548 IPR003591 -
Sed13g1910 1060 SMART LRR_typ_2 238 262 IPR003591 -
Sed13g1910 1060 SMART LRR_typ_2 477 501 IPR003591 -
Sed13g1910 1060 SMART LRR_typ_2 573 596 IPR003591 -
Sed13g1910 1060 ProSitePatterns Serine/Threonine protein kinases active-site signature. 848 860 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g1910 1060 SMART serkin_6 725 997 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1910 1060 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 98 262 - -
Sed13g1910 1060 ProSitePatterns Protein kinases ATP-binding region signature. 731 754 IPR017441 GO:0005524(InterPro)
Sed13g1910 1060 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 387 992 IPR051716 -
Sed13g1910 1060 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515(InterPro)
Sed13g1910 1060 SUPERFAMILY Protein kinase-like (PK-like) 703 991 IPR011009 -
Sed13g1910 1060 CDD STKc_IRAK 731 996 - -
Sed13g1910 1060 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 696 800 - -
Sed13g1910 1060 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 263 372 - -
Sed13g1910 1060 Pfam Protein kinase domain 728 990 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1910 1060 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515(InterPro)
Sed13g1910 1060 Pfam Leucine Rich Repeat 455 477 IPR001611 GO:0005515(InterPro)
Sed13g1910 1060 Pfam Leucine Rich Repeat 240 259 IPR001611 GO:0005515(InterPro)
Sed13g1910 1060 Pfam Leucine Rich Repeat 480 499 IPR001611 GO:0005515(InterPro)
Sed13g1910 1060 Pfam Leucine Rich Repeat 385 405 IPR001611 GO:0005515(InterPro)
Sed13g1910 1060 Pfam Leucine Rich Repeat 289 310 IPR001611 GO:0005515(InterPro)
Sed13g1910 1060 Pfam Leucine Rich Repeat 169 190 IPR001611 GO:0005515(InterPro)
Sed13g1910 1060 Pfam Leucine Rich Repeat 360 381 IPR001611 GO:0005515(InterPro)
Sed13g1910 1060 Pfam Leucine Rich Repeat 313 333 IPR001611 GO:0005515(InterPro)
Sed13g1910 1060 ProSiteProfiles Leucine-rich repeat profile. 240 262 IPR001611 GO:0005515(InterPro)
Sed13g1910 1060 ProSiteProfiles Protein kinase domain profile. 725 997 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g1910 1060 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 373 645 - -
Sed13g1910 1060 Gene3D Transferase(Phosphotransferase) domain 1 801 1004 - -
Sed13g1910 1060 SUPERFAMILY L domain-like 335 624 - -
Sed13g1910 1060 Pfam Leucine rich repeat N-terminal domain 99 139 IPR013210 -
Sed13g1910 1060 Gene3D Phosphorylase Kinase; domain 1 695 800 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1910 Sed-Chr13:24071046 Sed07g1794 Sed-Chr7:19908111 1.60E-60 dispersed
Sed01g3620 Sed-Chr1:65410772 Sed13g1910 Sed-Chr13:24071046 7.60E-20 transposed
Sed13g1910 Sed-Chr13:24071046 Sed05g1798 Sed-Chr5:31590989 3.00E-264 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80111 PF00069 Pkinase 5.80E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1910 K20718 - csv:101214398 1781.15