Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1932 ATGGCGGAGCGGCGACCCAACTCCTCGGGCAGCACCGAACCGGACGACAAGTCGGCCCAGAAGTACACGGGGGTGCGAAAGAGAAAATGGGGGAAGTGGGTGTCGGAGATCCGCCTGCCCAACAGCCGCGACCGGATCTGGCTGGGTTCGTACGACAAGCCCGAGCAGGCGGCGCGTGCCTTCGACGCCGCCCAGTTCTGCCTGCGTGGCCCCCACGCCAAGTTCAACTTCCCCGACACCCCCCCCGCCATCGACGGCGGCGACCGCCTCTCCGCCCAGGAGATTCAGGCCGCCGCCGCCAAGTTCGCCGCCGAGCCCGCCGCTGGGGACGTGGAAGCTGCCGCGGTGGAGGTTTGTGACTGGCCGGTTTGGGACTTGCTGGACGGCGGTTCGGATTTTGGGTTCGGGAATATCATGGTTCGGAATGAATTGATGACGTATGATGAGGATATGAATTTGCCGGTACAAAATGAGGATGAATTTGTTTATGGTGGAGAGTATTTTTGTCACGAGGCTAATTTCCTATGGAATTTTGATAATTATTAA 546 59.52 MAERRPNSSGSTEPDDKSAQKYTGVRKRKWGKWVSEIRLPNSRDRIWLGSYDKPEQAARAFDAAQFCLRGPHAKFNFPDTPPAIDGGDRLSAQEIQAAAAKFAAEPAAGDVEAAAVEVCDWPVWDLLDGGSDFGFGNIMVRNELMTYDEDMNLPVQNEDEFVYGGEYFCHEANFLWNFDNY 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24194781 24195326 - Sed0028063.1 Sed13g1932 735442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1932 181 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1932 181 SMART rav1_2 21 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1932 181 MobiDBLite consensus disorder prediction 1 26 - -
Sed13g1932 181 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1932 181 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1932 181 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1932 181 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677(InterPro)
Sed13g1932 181 MobiDBLite consensus disorder prediction 1 18 - -
Sed13g1932 181 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Sed13g1932 181 CDD AP2 20 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g1932 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 112 IPR051032 -
Sed13g1932 181 Pfam AP2 domain 21 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1932 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0653 Sed-Chr10:4487343 Sed13g1932 Sed-Chr13:24194781 1.10E-19 dispersed
Sed11g0856 Sed-Chr11:19983128 Sed13g1932 Sed-Chr13:24194781 1.80E-27 dispersed
Sed13g1770 Sed-Chr13:22730158 Sed13g1932 Sed-Chr13:24194781 1.50E-19 dispersed
Sed13g1932 Sed-Chr13:24194781 Sed14g0864 Sed-Chr14:17345118 9.00E-20 dispersed
Sed12g1689 Sed-Chr12:28127560 Sed13g1932 Sed-Chr13:24194781 2.70E-28 wgd
Sed13g1932 Sed-Chr13:24194781 Sed08g0941 Sed-Chr8:8158877 2.90E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g185 . Blo12g01035 . Bda03g00119 . . . . . . Cma01g01691 . Car09g00328 . Sed11g0856 . . Bhi04g01537 Tan02g1566 Cmetu03g1197 . Hepe08g1454 . Lcy13g2235 Cla05g01643 Cam05g1753 Cec05g1762 Cco05g1818 Clacu05g1744 Cmu05g1629 Cre05g1758 . . Cone17ag0957 Cone20ag0301 Lsi04g01372 . . . . . . . . Bpe04g00104 . . Sed13g1932 . Cmo09g00380 Cma09g00378 . Car01g01306 Car05g00886 . Cpe02g00301 Bhi09g03062 Tan01g3504 Cmetu07g1108 . Hepe01g1929 Mch11g0466 . Cla08g00976 Cam08g1424 Cec08g1002 Cco08g1125 Clacu08g1130 . Cre08g0912 Lsi08g00823 . Chy03g00645 Cme07g00162
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009714 2 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40474 PF00847 AP2 2.00E-12 CL0081 Sed TF