Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1935 ATGGAATCGGAGGATTCGGTGACGTTAAGATTGCAGGAATTGAACAAAGACTTGGGGAAGAAGCTGAGATTCGAGCAAGCAGTTTCCGCCATTGTTTCTCTTCTTCAGCATCGCTATTCCTCTGCTTCTCCCGCTCTTCGCAAATCGTTCTATTCTGTAATTTGCCGAGTTGCAACTGTATTGAAGACGAGGTTTACGGCTCCAGGGTTTTGGCTTGCTGGTCTCAAGCTTTTTGAGTTTGCTTTGACTTTGGTCTCCGATCATTCTGAGAGACAACACTTACAGGGCTGTGTAGCTCAGGCCAAGGAAATTCTGCACCAAATTGACGATCCTACTCCGCCTTCCCAAAGTACTCCTTCAAATGGAGGCTATCTTTTTGAGGGCCACCTCACTGTTGATCCGGAGCCACCCCAGCCCCAGTGGCTGGTGCAGTCGAACCTCTTGACAGCAGCTGCAGCTACGCTATTTAATGCTGAATCTTCTCAAGGTCCGGCTGAGAACAACAACACTTCTGAGAGTACTTCTGAGATTCTTCAAGCGCTTATTGAAAATCTAGAGAACTCTGTTGATGGGTTCATGGATTTGGACACGGTTCGTGGGCCACCGAAAGTCCCTCCTGCAAGTAAAGAACTCGTCGCAAAACTTCCTATAATTACTATAACAGAGGAAGTTCTTGCCAAGCTAGGAAGAGATGTGCAATGTGCCATTTGCAGGGAAAACTTAGCTGTTGATGACAAGATGCAGGAATTGCCTTGCAAGCATACATTCCACCCTCCTTGTTTGAAGCCATGGCTGGATGAGCATAACTCTTGTCCGATCTGTCGACATGAGTTGCCCACCGACGACCATGCTTATGAGAGCTGGAAGGAGCGAGAGAAGGAGGCCGAAGAAGAGAGAAAAGGGGCTGCAAATGCGGTGCGTGGTGGTGAATTTATGTATATTTGA 945 47.62 MESEDSVTLRLQELNKDLGKKLRFEQAVSAIVSLLQHRYSSASPALRKSFYSVICRVATVLKTRFTAPGFWLAGLKLFEFALTLVSDHSERQHLQGCVAQAKEILHQIDDPTPPSQSTPSNGGYLFEGHLTVDPEPPQPQWLVQSNLLTAAAATLFNAESSQGPAENNNTSESTSEILQALIENLENSVDGFMDLDTVRGPPKVPPASKELVAKLPIITITEEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHAYESWKEREKEAEEERKGAANAVRGGEFMYI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24243936 24248035 - Sed0005903.1 Sed13g1935 735445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1935 314 SUPERFAMILY RING/U-box 228 281 - -
Sed13g1935 314 Coils Coil 285 305 - -
Sed13g1935 314 MobiDBLite consensus disorder prediction 110 124 - -
Sed13g1935 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 281 IPR013083 -
Sed13g1935 314 Pfam Ring finger domain 233 275 IPR001841 -
Sed13g1935 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 280 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Sed13g1935 314 MobiDBLite consensus disorder prediction 108 130 - -
Sed13g1935 314 FunFam E3 ubiquitin-protein ligase RNF181 196 281 - -
Sed13g1935 314 CDD RING-H2_RNF126-like 233 275 - -
Sed13g1935 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Sed13g1935 314 SMART ring_2 234 274 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1935 Sed-Chr13:24243936 Sed14g0182 Sed-Chr14:2054441 9.80E-06 dispersed
Sed13g1935 Sed-Chr13:24243936 Sed01g1795 Sed-Chr1:13186009 4.90E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1935 K16274 - csv:101218065 425.246