Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1939 ATGGTCTGCGAGATGGAGATCGATGTTATTGAGGATATGGACGTCGAAGACCTTTCTTCGATGTGGCCTGAGGATGTCGGACCGGATGTTAGAAAACAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACAGAATAGAGGAACCAACCATCGTTGATTTCAAGAGACTTATAGAGTTAACAAACTATACCGAGAAAGGATCTTCACAATTACAATATCTTGCAAAACAGTGGGAGTATAAGCAGGCAAATGTTGTGCGCCTTCTTAAAGAAGAACTCGACATCCTAAGCAAGCAGAGGGAAGAAGTTGAGCTCAAGAAATTGAAGATATTAGAGGAACATCTTTTTGAGGAAGAAAAATATGCTGGCGATAAACGTCCAGTTTCCATTTTGGAAGAATCTTGTGATCTATGGCAAGATATGCCAAGGAGGAAAAGTGATTTCGTTGTTCAAAGTACGAGAGTCGAGATTGATGCCGAGTATGATACAGTGACATACTGGAAGCAGCGAGCTATGAACCTGAAAAAATTATTGGAAGCGAGTCTACAGCGAGAGCAATTACTTGCAGAGAAGCTTCAGGAAAACATAAAAAATATTGAGAAGCAGTCTTCACCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCTGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTTGTTTTTGGTCATCAGGATAAAGAGATGCGCTATCGATTTATCTACAACCATTTTCCTAGTTTGGATGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTCAGTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTTATGGAGAAAGGGCGATCTGCAAAGAGGGAAATACAGTTCGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTACGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAGTCAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGATTCGTGAGGAGATCGCCGTACAAAAGGCCAAGGAATCGGAACTAAACAAAACAATTCACATTACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCGACCATGTCTCACGAAATTAGATCTCCGCTGTCTGGAGTGGTTGGTATGGCTGAGATCTTATCCACCACAAAACTTGACCGGGAACAACGGCACCTGTTGGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTGTCTAAAGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTTCTGCAAACTGCTGCCGCATCATTGCGAAAATTCTTAGTTCTGAAGGGACGTATAGCAGATGATGTTCCTATAGAGGTCATCGGTGACGTTCTTAGGATTCGGCAAATTCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGGAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACACAATGGGAAAGGAGAAGAATGCCACAAGAAATCAACGGCTGATGACTCAACAGCTCCGGTAAATGGTCTGCAAGAAGGAACATGTCTTCCGGCTCCTCAGAATGGCTTGCATGGCGAAAAACACGGTGACAGAAATCATTTGCATTGTGATGCACCAGGAACCCCAAGCAAGAGTGAAACCATCATGAATGGAAGTAGAGATAACAAATCTTGTTCACCCGAAACGACGGTATGGATACGCTGTGATGTATATGACACAGGAATTGGAATACCAGAAAATGCATTGCCAAACCTTTTTAAAAGGTACATGCAAGCTAGTGCTGATCATGCTAGAAAGTATGGAGGGACTGGACTTGGACTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTAACTAGCCGAGAGAACCATGGATCTACATTTACATTTATCTTACCATACAAGGTTTCAGCCACCTGCAACCCTTCCGACGATTCTGACGAGCTCTCGGACGACGAGTCCACAAATGACGAACTGACTGAGGGATTTTTCCAATTCCAACCCCACAGTTTCAGTTCGCTATCATCTTCTAATGGATCCACAAGAATCCCAAGCTCATTGTTACACACAACTGGGTATCCCACAACCAAACTCAATGGATTTGCTGAAAATTCTTATCCTGTTCCCTCAAACAATATCACCCCACAAGAAACTGCTTCTCTTAGAGATCCCCATTCTGCCAATGGCACATTAATTTCAAGCGAATCACAATGTTCGTCGAGTCAGATAAACTCAAATCCCGAGAAATCAACTGTTGGAGAAAATCGAAACGAACCCGACACGAATGCTCGGTTTCAAAATGTCGAAGATAGGTTGGAAAAGCCAAGTAATAAGCTTCAAAAAACAGATCAGGGGACAGGGAGATCCGATGCAAGTTCCCACTGCAGAACTAGCAGTAGTCGTTCTGAACTAACAATAGCAATGGAGCCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATCATGGTGACTCAGTCTATGATGAAAAAGTTTGGACAAAAAATTGACGTCGTCACTAACGGAATCGAAGCCGTTCGTGCTGTTCAACGACGTTCATACGATCTCATTCTCATGGTATGTTTGCCTTGCACACTTACAATCGCATGCATCGACTTTGAAACAATCTTTTGA 2742 42.05 MVCEMEIDVIEDMDVEDLSSMWPEDVGPDVRKQFNVERPGADQDMLEEVNRIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANVVRLLKEELDILSKQREEVELKKLKILEEHLFEEEKYAGDKRPVSILEESCDLWQDMPRRKSDFVVQSTRVEIDAEYDTVTYWKQRAMNLKKLLEASLQREQLLAEKLQENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKEMRYRFIYNHFPSLDEEDIIGRTDVEIFSGAGVKESQDFKKEVMEKGRSAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGVNYMGMDITDQVKKREKMAKIREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVGMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLKGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGEVGINLYVLPYPHNGKGEECHKKSTADDSTAPVNGLQEGTCLPAPQNGLHGEKHGDRNHLHCDAPGTPSKSETIMNGSRDNKSCSPETTVWIRCDVYDTGIGIPENALPNLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVTSRENHGSTFTFILPYKVSATCNPSDDSDELSDDESTNDELTEGFFQFQPHSFSSLSSSNGSTRIPSSLLHTTGYPTTKLNGFAENSYPVPSNNITPQETASLRDPHSANGTLISSESQCSSSQINSNPEKSTVGENRNEPDTNARFQNVEDRLEKPSNKLQKTDQGTGRSDASSHCRTSSSRSELTIAMEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMVCLPCTLTIACIDFETIF 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24280361 24288085 + Sed0000787.3 Sed13g1939 735449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1939 913 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 45 895 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Sed13g1939 913 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 595 670 IPR003594 -
Sed13g1939 913 Coils Coil 181 215 - -
Sed13g1939 913 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Sed13g1939 913 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed13g1939 913 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed13g1939 913 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed13g1939 913 PRINTS Bacterial sensor protein C-terminal signature 615 625 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed13g1939 913 MobiDBLite consensus disorder prediction 544 586 - -
Sed13g1939 913 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed13g1939 913 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed13g1939 913 MobiDBLite consensus disorder prediction 736 798 - -
Sed13g1939 913 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed13g1939 913 MobiDBLite consensus disorder prediction 799 814 - -
Sed13g1939 913 MobiDBLite consensus disorder prediction 736 838 - -
Sed13g1939 913 SUPERFAMILY CheY-like 846 895 IPR011006 -
Sed13g1939 913 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Sed13g1939 913 CDD REC_hyHK_CKI1_RcsC-like 848 899 - -
Sed13g1939 913 Gene3D - 841 899 - -
Sed13g1939 913 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Sed13g1939 913 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed13g1939 913 SMART HKATPase_4 482 672 IPR003594 -
Sed13g1939 913 Gene3D - 367 435 - -
Sed13g1939 913 ProSiteProfiles Response regulatory domain profile. 847 913 IPR001789 GO:0000160(InterPro)
Sed13g1939 913 FunFam Putative histidine kinase 5 359 436 - -
Sed13g1939 913 Gene3D PAS domain 222 348 - -
Sed13g1939 913 MobiDBLite consensus disorder prediction 815 838 - -
Sed13g1939 913 Coils Coil 92 119 - -
Sed13g1939 913 FunFam Histidine kinase 5 213 348 - -
Sed13g1939 913 Gene3D - 436 676 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1937 Sed-Chr13:24280361 Sed13g1939 Sed-Chr13:24280361 0.00E+00 dispersed
Sed13g1938 Sed-Chr13:24280361 Sed13g1939 Sed-Chr13:24280361 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40477 PF02518 HATPase_c 4.30E-28 CL0025 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1939 - - - 0.0