Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1939 ATGGTCTGCGAGATGGAGATCGATGTTATTGAGGATATGGACGTCGAAGACCTTTCTTCGATGTGGCCTGAGGATGTCGGACCGGATGTTAGAAAACAGTTCAACGTAGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACAGAATAGAGGAACCAACCATCGTTGATTTCAAGAGACTTATAGAGTTAACAAACTATACCGAGAAAGGATCTTCACAATTACAATATCTTGCAAAACAGTGGGAGTATAAGCAGGCAAATGTTGTGCGCCTTCTTAAAGAAGAACTCGACATCCTAAGCAAGCAGAGGGAAGAAGTTGAGCTCAAGAAATTGAAGATATTAGAGGAACATCTTTTTGAGGAAGAAAAATATGCTGGCGATAAACGTCCAGTTTCCATTTTGGAAGAATCTTGTGATCTATGGCAAGATATGCCAAGGAGGAAAAGTGATTTCGTTGTTCAAAGTACGAGAGTCGAGATTGATGCCGAGTATGATACAGTGACATACTGGAAGCAGCGAGCTATGAACCTGAAAAAATTATTGGAAGCGAGTCTACAGCGAGAGCAATTACTTGCAGAGAAGCTTCAGGAAAACATAAAAAATATTGAGAAGCAGTCTTCACCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCTGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTTGTTTTTGGTCATCAGGATAAAGAGATGCGCTATCGATTTATCTACAACCATTTTCCTAGTTTGGATGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTCAGTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTTATGGAGAAAGGGCGATCTGCAAAGAGGGAAATACAGTTCGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTACGTTGAACCTGTCTTTAGCAAGGCTGGGGAGACAATTGGAGTCAATTATATGGGAATGGACATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGATTCGTGAGGAGATCGCCGTACAAAAGGCCAAGGAATCGGAACTAAACAAAACAATTCACATTACGGAGGAGACAATGCGAGCAAAGCAAATGCTAGCGACCATGTCTCACGAAATTAGATCTCCGCTGTCTGGAGTGGTTGGTATGGCTGAGATCTTATCCACCACAAAACTTGACCGGGAACAACGGCACCTGTTGGATGTTATGCTGTCTTCAGGAGACTTGGTGCTTCAACTTATAAACGATATCTTGGACCTGTCTAAAGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAAACATGTTCTGCAAACTGCTGCCGCATCATTGCGAAAATTCTTAGTTCTGAAGGGACGTATAGCAGATGATGTTCCTATAGAGGTCATCGGTGACGTTCTTAGGATTCGGCAAATTCTCACCAACTTGATCAGCAACGCAATCAAGTTCACTCATCAAGGGGAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACACAATGGGAAAGGAGAAGAATGCCACAAGAAATCAACGGCTGATGACTCAACAGCTCCGGTAAATGGTCTGCAAGAAGGAACATGTCTTCCGGCTCCTCAGAATGGCTTGCATGGCGAAAAACACGGTGACAGAAATCATTTGCATTGTGATGCACCAGGAACCCCAAGCAAGAGTGAAACCATCATGAATGGAAGTAGAGATAACAAATCTTGTTCACCCGAAACGACGGTATGGATACGCTGTGATGTATATGACACAGGAATTGGAATACCAGAAAATGCATTGCCAAACCTTTTTAAAAGGTACATGCAAGCTAGTGCTGATCATGCTAGAAAGTATGGAGGGACTGGACTTGGACTAGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTCACCGTAACTAGCCGAGAGAACCATGGATCTACATTTACATTTATCTTACCATACAAGGTTTCAGCCACCTGCAACCCTTCCGACGATTCTGACGAGCTCTCGGACGACGAGTCCACAAATGACGAACTGACTGAGGGATTTTTCCAATTCCAACCCCACAGTTTCAGTTCGCTATCATCTTCTAATGGATCCACAAGAATCCCAAGCTCATTGTTACACACAACTGGGTATCCCACAACCAAACTCAATGGATTTGCTGAAAATTCTTATCCTGTTCCCTCAAACAATATCACCCCACAAGAAACTGCTTCTCTTAGAGATCCCCATTCTGCCAATGGCACATTAATTTCAAGCGAATCACAATGTTCGTCGAGTCAGATAAACTCAAATCCCGAGAAATCAACTGTTGGAGAAAATCGAAACGAACCCGACACGAATGCTCGGTTTCAAAATGTCGAAGATAGGTTGGAAAAGCCAAGTAATAAGCTTCAAAAAACAGATCAGGGGACAGGGAGATCCGATGCAAGTTCCCACTGCAGAACTAGCAGTAGTCGTTCTGAACTAACAATAGCAATGGAGCCCAGAATTCTTCTTGTTGAGGATAATAAGACCAATATCATGGTGACTCAGTCTATGATGAAAAAGTTTGGACAAAAAATTGACGTCGTCACTAACGGAATCGAAGCCGTTCGTGCTGTTCAACGACGTTCATACGATCTCATTCTCATGGTATGTTTGCCTTGCACACTTACAATCGCATGCATCGACTTTGAAACAATCTTTTGA 2742 42.05 MVCEMEIDVIEDMDVEDLSSMWPEDVGPDVRKQFNVERPGADQDMLEEVNRIEEPTIVDFKRLIELTNYTEKGSSQLQYLAKQWEYKQANVVRLLKEELDILSKQREEVELKKLKILEEHLFEEEKYAGDKRPVSILEESCDLWQDMPRRKSDFVVQSTRVEIDAEYDTVTYWKQRAMNLKKLLEASLQREQLLAEKLQENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKEMRYRFIYNHFPSLDEEDIIGRTDVEIFSGAGVKESQDFKKEVMEKGRSAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGVNYMGMDITDQVKKREKMAKIREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVGMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLKGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGEVGINLYVLPYPHNGKGEECHKKSTADDSTAPVNGLQEGTCLPAPQNGLHGEKHGDRNHLHCDAPGTPSKSETIMNGSRDNKSCSPETTVWIRCDVYDTGIGIPENALPNLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVTSRENHGSTFTFILPYKVSATCNPSDDSDELSDDESTNDELTEGFFQFQPHSFSSLSSSNGSTRIPSSLLHTTGYPTTKLNGFAENSYPVPSNNITPQETASLRDPHSANGTLISSESQCSSSQINSNPEKSTVGENRNEPDTNARFQNVEDRLEKPSNKLQKTDQGTGRSDASSHCRTSSSRSELTIAMEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMVCLPCTLTIACIDFETIF 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24280361 24288085 + Sed0000787.3 Sed13g1939 735449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1939 913 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 45 895 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Sed13g1939 913 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 595 670 IPR003594 -
Sed13g1939 913 Coils Coil 181 215 - -
Sed13g1939 913 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 670 IPR036890 -
Sed13g1939 913 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed13g1939 913 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed13g1939 913 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed13g1939 913 PRINTS Bacterial sensor protein C-terminal signature 615 625 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Sed13g1939 913 MobiDBLite consensus disorder prediction 544 586 - -
Sed13g1939 913 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed13g1939 913 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed13g1939 913 MobiDBLite consensus disorder prediction 736 798 - -
Sed13g1939 913 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed13g1939 913 MobiDBLite consensus disorder prediction 799 814 - -
Sed13g1939 913 MobiDBLite consensus disorder prediction 736 838 - -
Sed13g1939 913 SUPERFAMILY CheY-like 846 895 IPR011006 -
Sed13g1939 913 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Sed13g1939 913 CDD REC_hyHK_CKI1_RcsC-like 848 899 - -
Sed13g1939 913 Gene3D - 841 899 - -
Sed13g1939 913 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Sed13g1939 913 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed13g1939 913 SMART HKATPase_4 482 672 IPR003594 -
Sed13g1939 913 Gene3D - 367 435 - -
Sed13g1939 913 ProSiteProfiles Response regulatory domain profile. 847 913 IPR001789 GO:0000160(InterPro)
Sed13g1939 913 FunFam Putative histidine kinase 5 359 436 - -
Sed13g1939 913 Gene3D PAS domain 222 348 - -
Sed13g1939 913 MobiDBLite consensus disorder prediction 815 838 - -
Sed13g1939 913 Coils Coil 92 119 - -
Sed13g1939 913 FunFam Histidine kinase 5 213 348 - -
Sed13g1939 913 Gene3D - 436 676 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1939 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1937 Sed-Chr13:24280361 Sed13g1939 Sed-Chr13:24280361 0.00E+00 dispersed
Sed13g1938 Sed-Chr13:24280361 Sed13g1939 Sed-Chr13:24280361 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0961 . 16 1220 Histidine Kinase Gene Family AT2G17820 64.3 0.0e+00 1455.7
Sed04g0960 . 5 1194 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1454.9
Sed03g1085 . 23 986 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1320.4
Sed06g0270 . 36 1011 Histidine Kinase Gene Family AT2G01830 70.3 0.0e+00 1312.4
Sed06g0268 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed06g0269 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed07g0081 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed07g0082 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed05g2083 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed05g2084 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed09g0384 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed09g0383 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed05g0964 . 302 1249 Histidine Kinase Gene Family AT2G01830 51.5 2.7e-265 912.9
Sed01g0554 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0555 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0556 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0557 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed13g1937 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed13g1938 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed05g1812 . 1 986 Histidine Kinase Gene Family AT5G10720 57.1 1.7e-287 986.5
Sed13g1939 . 1 899 Histidine Kinase Gene Family AT5G10720 57.7 4.7e-258 888.6
Sed11g0823 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0824 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0858 . 15 1114 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1598.6
Sed05g2127 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed05g2128 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed02g1136 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.1 0.0e+00 1194.9
Sed12g0771 . 31 1124 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1178.7
Sed12g0772 . 31 1035 Histidine Kinase Gene Family AT1G09570 54.9 0.0e+00 1125.9
Sed12g0772 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1640.2
Sed12g0771 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.0 0.0e+00 1639.0
Sed02g1136 . 13 1061 Histidine Kinase Gene Family AT2G18790 77.4 0.0e+00 1634.0
Sed01g2201 . 7 1049 Histidine Kinase Gene Family AT2G18790 58.9 0.0e+00 1227.6
Sed01g2202 . 7 951 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1142.9
Sed11g0823 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed11g0824 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed05g2127 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed05g2128 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed11g0858 . 19 1047 Histidine Kinase Gene Family AT2G18790 51.4 1.4e-307 1053.5
Sed05g2127 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed05g2128 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed12g0771 . 31 1126 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1139.8
Sed02g1136 . 27 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1132.1
Sed11g0823 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed11g0824 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed12g0772 . 31 1038 Histidine Kinase Gene Family AT5G35840 53.4 0.0e+00 1092.8
Sed02g1136 . 3 1122 Histidine Kinase Gene Family AT4G16250 74.9 0.0e+00 1691.4
Sed12g0771 . 34 1126 Histidine Kinase Gene Family AT4G16250 75.5 0.0e+00 1681.8
Sed12g0772 . 34 1063 Histidine Kinase Gene Family AT4G16250 75.6 0.0e+00 1584.3
Sed01g2201 . 30 1110 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1267.7
Sed01g2202 . 30 951 Histidine Kinase Gene Family AT4G16250 59.8 0.0e+00 1129.0
Sed11g0823 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed11g0824 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed05g2127 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed05g2128 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed11g0858 . 13 1112 Histidine Kinase Gene Family AT4G16250 50.5 0.0e+00 1090.5
Sed01g2201 . 13 1124 Histidine Kinase Gene Family AT4G18130 61.5 0.0e+00 1355.5
Sed02g1136 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.3 0.0e+00 1274.6
Sed12g0771 . 43 1124 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1261.1
Sed01g2202 . 13 951 Histidine Kinase Gene Family AT4G18130 64.3 0.0e+00 1198.3
Sed12g0772 . 43 1065 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40477 PF02518 HATPase_c 4.30E-28 CL0025 Sed TR