Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1941 ATGGGATATCTGAATTCGGTGTTGTCTAGCCCGAGCCAGATTCATGTTTCTGATGAATCGCCTGTAAGCGGCGGGGGACTAAGTCAGAATGGAAAGTTCAGCTACGGATATGCTAGCTCTCCTGGGAAGAGATCTTCGATGGAAGATTTTTACGAAACGCGAATAGATGGCGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTTGATGGCCATGGTGGAGTACGAGCTGCTGAGTATGTTAAGCACAATCTTTTTAGTAATTTGATCGGGCATCCAAAGTTCATATCAGATACCAAATCTGCAATAGCTGATGCATACAACCACACCGACAAAGAATTTCTGAAGTCTGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCTATCTTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGCGATTCTCGGGCCGTTATTTCCCGGGGAGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGGCGACGAATTGAGGATGCCGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTACTTGCTGTTTCACGTGCATTCGGTGATAGGTTGTTAAAGCAATATGTTGTAGCTGACCCTGAAATTCAGGAGGAAAAGATTGACAGCTCGCTCGAGTTTCTTATACTTGCAAGTGATGGACTATGGGATGTCGTTACTAATGAGGAAGCTGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCAAAGAGGTTGATGCAAGAAGCATATCAACGAGGCAGCGCAGATAACATTACCTGCATTGTCGTCCGTTTCTTAGCGAATCAAGGAAGTCCCTCTCATGGAACTTCTGGGTAA 882 45.58 MGYLNSVLSSPSQIHVSDESPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGVRAAEYVKHNLFSNLIGHPKFISDTKSAIADAYNHTDKEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVISRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVTNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCIVVRFLANQGSPSHGTSG 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24319361 24324544 - Sed0023968.1 Sed13g1941 735451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1941 293 SMART PP2C_SIG_2 45 280 IPR001932 -
Sed13g1941 293 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Sed13g1941 293 Pfam Protein phosphatase 2C 63 273 IPR001932 -
Sed13g1941 293 CDD PP2Cc 33 280 IPR001932 -
Sed13g1941 293 SMART PP2C_4 24 278 IPR001932 -
Sed13g1941 293 MobiDBLite consensus disorder prediction 1 27 - -
Sed13g1941 293 Gene3D - 26 285 IPR036457 -
Sed13g1941 293 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169(InterPro)
Sed13g1941 293 PANTHER PROTEIN PHOSPHATASE 34 279 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed13g1941 293 SUPERFAMILY PP2C-like 28 280 IPR036457 -
Sed13g1941 293 FunFam probable protein phosphatase 2C 59 26 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1813 Sed-Chr5:31743957 Sed13g1941 Sed-Chr13:24319361 7.10E-152 dispersed
Sed05g1814 Sed-Chr5:31743957 Sed13g1941 Sed-Chr13:24319361 7.10E-152 dispersed
Sed13g0046 Sed-Chr13:297415 Sed13g1941 Sed-Chr13:24319361 7.00E-23 dispersed
Sed13g0082 Sed-Chr13:517530 Sed13g1941 Sed-Chr13:24319361 3.60E-88 dispersed
Sed13g0083 Sed-Chr13:517530 Sed13g1941 Sed-Chr13:24319361 1.30E-94 dispersed
Sed13g0206 Sed-Chr13:1347815 Sed13g1941 Sed-Chr13:24319361 1.00E-25 dispersed
Sed13g1480 Sed-Chr13:19999970 Sed13g1941 Sed-Chr13:24319361 2.10E-47 dispersed
Sed13g1941 Sed-Chr13:24319361 Sed13g1943 Sed-Chr13:24319361 3.70E-164 dispersed
Sed13g1941 Sed-Chr13:24319361 Sed13g1942 Sed-Chr13:24319361 6.80E-134 tandem
Sed12g1168 Sed-Chr12:7766902 Sed13g1941 Sed-Chr13:24319361 1.60E-42 transposed
Sed13g1941 Sed-Chr13:24319361 Sed05g1811 Sed-Chr5:31688023 5.50E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1941 K17506 - csv:101216117 556.214