Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1942 ATGGGATATCTGAATTCGGTGTTGTCTAGCCCGAGCCAGATTCATGTTTCTGATGAATCGCCTGTAAGCGGCGGGGGACTAAGTCAGAATGGAAAGTTCAGCTACGGATATGCTAGCTCTCCTGGGAAGAGATCTTCGATGGAAGATTTTTACGAAACGCGAATAGATGGCGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTTGATGGCCATGGTGGAGTACGAGCTGCTGAGTATGTTAAGCACAATCTTTTTAGTAATTTGATCGGGCATCCAAAGTTCATATCAGATACCAAATCTGCAATAGCTGATGCATACAACCACACCGACAAAGAATTTCTGAAGTCTGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCTATCTTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGCGATTCTCGGGCCGTTATTTCCCGGGGAGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGGCGACGAATTGAGGATGCCGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTACTTGCTGTTTCACGTGCATTCGGTGATAGGTTGTTAAAGCAATATGTTGTAGCTGACCCTGAAATTCAGGAGGAAAAGATTGACAGCTCGCTCGAGTTTCTTATACTTGCAAGTGATGGACTATGGGATGTCGTTACTAATGAGGTTTGCGTGTCCTTTCATTTCATTTATGATCAACATACAACTCTCAATTTTGATGACAAATAA 786 44.15 MGYLNSVLSSPSQIHVSDESPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGVRAAEYVKHNLFSNLIGHPKFISDTKSAIADAYNHTDKEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVISRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVTNEVCVSFHFIYDQHTTLNFDDK 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24319361 24324544 - Sed0023968.2 Sed13g1942 735452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1942 261 ProSiteProfiles PPM-type phosphatase domain profile. 34 261 IPR001932 -
Sed13g1942 261 MobiDBLite consensus disorder prediction 1 27 - -
Sed13g1942 261 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169(InterPro)
Sed13g1942 261 CDD PP2Cc 33 246 IPR001932 -
Sed13g1942 261 PANTHER PROTEIN PHOSPHATASE 34 246 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed13g1942 261 SMART PP2C_4 24 249 IPR001932 -
Sed13g1942 261 Gene3D - 26 255 IPR036457 -
Sed13g1942 261 Pfam Protein phosphatase 2C 63 246 IPR001932 -
Sed13g1942 261 SUPERFAMILY PP2C-like 28 247 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1942 Sed-Chr13:24319361 Sed13g2130 Sed-Chr13:25963283 1.10E-42 dispersed
Sed13g1941 Sed-Chr13:24319361 Sed13g1942 Sed-Chr13:24319361 6.80E-134 tandem
Sed13g1942 Sed-Chr13:24319361 Sed13g1943 Sed-Chr13:24319361 4.60E-134 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1942 K17506 - csv:101216117 459.914