Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1943 | ATGGGATATCTGAATTCGGTGTTGTCTAGCCCGAGCCAGATTCATGTTTCTGATGAATCGCCTGTAAGCGGCGGGGGACTAAGTCAGAATGGAAAGTTCAGCTACGGATATGCTAGCTCTCCTGGGAAGAGATCTTCGATGGAAGATTTTTACGAAACGCGAATAGATGGCGTGGAAGGAGAAATAGTTGGTCTATTTGGTGTTTTTGATGGCCATGGTGGAGTACGAGCTGCTGAGTATGTTAAGCACAATCTTTTTAGTAATTTGATCGGGCATCCAAAGTTCATATCAGATACCAAATCTGCAATAGCTGATGCATACAACCACACCGACAAAGAATTTCTGAAGTCTGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCTATCTTAGTTGGTGACCGCTTACTTGTTGCAAATGTGGGCGATTCTCGGGCCGTTATTTCCCGGGGAGGCACTGCCATTGCTGTCTCTCGAGATCATAAGCCTGACCAAACTGATGAGCGGCGACGAATTGAGGATGCCGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTACTTGCTGTTTCACGTGCATTCGGTGATAGGTTGTTAAAGCAATATGTTGTAGCTGACCCTGAAATTCAGGAGGAAAAGATTGACAGCTCGCTCGAGTTTCTTATACTTGCAAGTGATGGACTATGGGATGTCGTTACTAATGAGGAAGCTGTTGCTATGACTAAACCAATTCAGGACCCAGAAGAGGCAGCAAAGAGGTTGATGCAAGAAGCATATCAACGAGGCAGCGCAGATAACATTACCTGCATTGTCGTCCGTTTCTTAGCGAATCAAGGAAGTCCCTCTCATGGAACTTCTGGGTAA | 882 | 45.58 | MGYLNSVLSSPSQIHVSDESPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGVRAAEYVKHNLFSNLIGHPKFISDTKSAIADAYNHTDKEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVISRGGTAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVTNEEAVAMTKPIQDPEEAAKRLMQEAYQRGSADNITCIVVRFLANQGSPSHGTSG | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 24319361 | 24324510 | - | Sed0023968.3 | Sed13g1943 | 735453 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1943 | 293 | SMART | PP2C_SIG_2 | 45 | 280 | IPR001932 | - | |
Sed13g1943 | 293 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 280 | IPR001932 | - | |
Sed13g1943 | 293 | Pfam | Protein phosphatase 2C | 63 | 273 | IPR001932 | - | |
Sed13g1943 | 293 | CDD | PP2Cc | 33 | 280 | IPR001932 | - | |
Sed13g1943 | 293 | SMART | PP2C_4 | 24 | 278 | IPR001932 | - | |
Sed13g1943 | 293 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Sed13g1943 | 293 | Gene3D | - | 26 | 285 | IPR036457 | - | |
Sed13g1943 | 293 | ProSitePatterns | PPM-type phosphatase domain signature. | 65 | 73 | IPR000222 | GO:0043169(InterPro) | |
Sed13g1943 | 293 | PANTHER | PROTEIN PHOSPHATASE | 34 | 279 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed13g1943 | 293 | SUPERFAMILY | PP2C-like | 28 | 280 | IPR036457 | - | |
Sed13g1943 | 293 | FunFam | probable protein phosphatase 2C 59 | 26 | 284 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g1168 | Sed-Chr12:7766902 | Sed13g1943 | Sed-Chr13:24319361 | 1.60E-42 | dispersed | |
Sed13g1941 | Sed-Chr13:24319361 | Sed13g1943 | Sed-Chr13:24319361 | 3.70E-164 | dispersed | |
Sed13g1943 | Sed-Chr13:24319361 | Sed13g2130 | Sed-Chr13:25963283 | 1.50E-53 | dispersed | |
Sed13g1942 | Sed-Chr13:24319361 | Sed13g1943 | Sed-Chr13:24319361 | 4.60E-134 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1943 | K17506 | - | csv:101216117 | 556.214 |