Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1946 ATGCTCATGGCCAAAACGGCGCCGTTTGGGGTGATGTGCAAGTTCTTTGCTCCTTTTCTGGTTTTGTTTGTTCCGGCCACGGCGGCGGCCTTATCGTTCGGTTCCTATTCTGCCACGTGTCCCGCCGCGGAGTTTATTGTGAGGAACACCGTCAGATCGGCTTCTGTCCAGGACCCCACCGTCCCCGGCAAGCTCCTCCGGTTGCTTTTCCATGACTGTTTCGTTGAGGGGTGTGATGGATCTGTATTGCTCCAAGGAAACGGAACGGAACGAACGGATCCAGGAAACCGTTCACTTGGAGGATTTGAAGTGATCGATTCAGCTAAAAGAGCGCTTGAATTTTTCTGTCCCGGAACGGTTTCCTGTGCCGACATTGTCGTTTTGGCCGCCAGAGATGCCGTTGAATTCGCCGGCGGTCCGCCCGTCCAAGTCCCGACCGGGCGGCTAGACGGAAAGATATCAACGGCGACAAACGTCCGTCCAAACATTGTCGACACAAGCTTTTCAGTCGACCAAATGCTAAATCTCTTCACCTCAAAAGGCCTAACGGCGGAAGATCTAGTCATCCTCTCCGGGGCCCACACAATCGGAACGGCCCACTGCAGCGCATTCAGCGACCGGTTCAGAACTGGCCCAAACGGTAAACCGACGTTCATCGACGCCACTCTCGACCGCGCCTACGCCGACGAGCTCATGCGGCGGTGCCCCGCCGGCGCCGCCCCTGAAGTCACCGTCGACAACGACCCCGCGACGGCGAATGTGTTCGATAATCAGTACTACAAGAACATTCTGTCCCACAGGGGGCTGCTTCAGTCGGATTCGGTTCTTATTAACGACGGTCGGACCCGGGCCCAGGTGGACCGGTTTGCGAAGGACCAGATTGGGTTTTTTGAGAATTGGGCTCAGTCGTTCTTGAAACTTAGTAGCGTTGGAGTTAAAACTGGAGATGATGGCGAAATTAGAGTTTCTTGTTCTACTGTTAATGTTTGA 990 54.75 MLMAKTAPFGVMCKFFAPFLVLFVPATAAALSFGSYSATCPAAEFIVRNTVRSASVQDPTVPGKLLRLLFHDCFVEGCDGSVLLQGNGTERTDPGNRSLGGFEVIDSAKRALEFFCPGTVSCADIVVLAARDAVEFAGGPPVQVPTGRLDGKISTATNVRPNIVDTSFSVDQMLNLFTSKGLTAEDLVILSGAHTIGTAHCSAFSDRFRTGPNGKPTFIDATLDRAYADELMRRCPAGAAPEVTVDNDPATANVFDNQYYKNILSHRGLLQSDSVLINDGRTRAQVDRFAKDQIGFFENWAQSFLKLSSVGVKTGDDGEIRVSCSTVNV 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24376363 24381090 - Sed0024750.1 Sed13g1946 735456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1946 329 CDD secretory_peroxidase 31 327 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed13g1946 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Sed13g1946 329 FunFam Peroxidase 164 307 - -
Sed13g1946 329 Gene3D - 36 328 - -
Sed13g1946 329 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 Gene3D Peroxidase, domain 2 164 307 - -
Sed13g1946 329 PANTHER - 21 328 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 SUPERFAMILY Heme-dependent peroxidases 31 328 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 ProSiteProfiles Plant heme peroxidase family profile. 30 328 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g1946 329 FunFam Peroxidase 34 175 - -
Sed13g1946 329 Pfam Peroxidase 47 292 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1946 Sed-Chr13:24376363 Sed14g0905 Sed-Chr14:17988303 5.00E-61 dispersed
Sed13g1946 Sed-Chr13:24376363 Sed14g1212 Sed-Chr14:21362100 1.40E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1946 K00430 - csv:101211842 529.25