Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1947 ATGGCCCCGCAGTTGATTTGGCTTTCGTCCTTGTCGACGGAGTGTGTGGTTCACAAAACTTGCTTCACTCTTCCAACCAAACAATTCTTCACGCTTCAAATTTCAACACGAAATCATCATCTTCACCATTTTCCAAACCCTAATTCCTCATTTCCTCCTCAAAATCCCATGGCTTCTCTCCGCCCGTTCCTTCTCCACGCGCCTAACCCCACGCGCCTTCTTCTTCACGCGCCGTCGCGTTCCTCTTTGATACTAGTCGCCGCCAGAAGGAGACTCTCCGTGCGCGGTGGCGCCGTTGCAGGCGCCGAAGCTTCTGCTCTGATCGAGGCCGGCGATGACGATCGGGCGGTTCTGTTGAGTCCGGCGGCCGAGGAGAAGCTCGCCGGCGGAGATGCGGCGGAGTATGACTGGACGGAGGAGTGGTATCCGTTGTACCTGACGAGGAATGTGCCGGCGGATGCGCCGTTAGGGCTCACTGTGTTCGATAAACAGTTGGTTCTGTATCGCGATGGATCTGGCGAGCTCCGCTGTCATGAAGATAGGTGCCCGCACAGGCTAGCAAAGCTCTCTGAAGGACAATTGATAGATGGGAAACTGGAATGTCTTTACCATGGCTGGCAATTTGAAGGCGAGGGCAAATGTGTAAAGATTCCTCAGCTTCCATCAGATGCCAAGATCCCTAGATCAGCATGTCTTAGAACATACGAAGTGAGGGACTCGCAGGGAGTTGTATGGGTGTGGATGTCTTTGGAAAAGCCACCAACCCTGAAGAAGATACCATGGTTCGAGAACTTTGATCGGCCTGGGTTCCGAGACATTTCGACTGTTCATGAGCTTCCCTATGATCACTCCATTCTCCTTGAGAACCTTATGGATCCTGCACATATACCTATCTCTCACGACAGAACAGATTTTACTGCCAAAAGGGAAGATGCTCAACCATTAGGATTCGAGGTAACCGAGCGTACGAATCGTGGTTTCGCTGGTCGATGGGGCCGTGCTACTGACAAGCCATTGCCAAACTTTTTAAGATTTGAAGCACCTTGTGTCCTTCAAAATAACAGGGAAATTCCCAAGGAAAAAGGTGGGATGGATTACTTTTCTGGACTTTTTCTTTGTAGGCCTACAGGTCAGGGAAAATCCATGCTTATAGTGAGATTTGGTAGCACAAGATCATCTCCCCTTGTAAAATTGCTGCCTTCATGGTTTATGCACCAAAATGCCTGCAAGGTTTTTGAGCAAGATATGGGATTTCTTTCATCCCAAAATGAGGTTCTAATAAGGGAAAAAGTGCCCACCAAGGAACTCTACCTCAACTTACGATCTTCCGACACATGGGTTCTCGAGTACCGACGCTGGATGGACAAGGTTGGGCACGGGATGCCTTATTACTTTGGACACAGTACAATTTCATTGCCCAAACTGCCTGCCGTTGTCGAGCATGCACCAGTGGGATTTGTTGCTGGGGCCTCGGCATCTGCTCCAGCTAAGGGAGGAATCGGAACAATGCATGCTCCAAACCTGTCAAATCGATACTTTCGACATATCATTCATTGCAGAAGTTGTAGTAATGTCATAAAATCTTTTCAAACTTGGAACAAGGCTCTTTCTGCTATTGCTATCACATTGGTTGCTTTGGCAATTTTAGTAGTTGGAAGACAATGGAAGGTTCTCATTCTCTTGTCAGCAGCTTTGTGCTATGGTGGAGCATATGCATGCTCCTCTATTGTAGCCTTAAATACAACAAATTTTATAAGAACTCACAGAAGGTTGTAA 1776 48.14 MAPQLIWLSSLSTECVVHKTCFTLPTKQFFTLQISTRNHHLHHFPNPNSSFPPQNPMASLRPFLLHAPNPTRLLLHAPSRSSLILVAARRRLSVRGGAVAGAEASALIEAGDDDRAVLLSPAAEEKLAGGDAAEYDWTEEWYPLYLTRNVPADAPLGLTVFDKQLVLYRDGSGELRCHEDRCPHRLAKLSEGQLIDGKLECLYHGWQFEGEGKCVKIPQLPSDAKIPRSACLRTYEVRDSQGVVWVWMSLEKPPTLKKIPWFENFDRPGFRDISTVHELPYDHSILLENLMDPAHIPISHDRTDFTAKREDAQPLGFEVTERTNRGFAGRWGRATDKPLPNFLRFEAPCVLQNNREIPKEKGGMDYFSGLFLCRPTGQGKSMLIVRFGSTRSSPLVKLLPSWFMHQNACKVFEQDMGFLSSQNEVLIREKVPTKELYLNLRSSDTWVLEYRRWMDKVGHGMPYYFGHSTISLPKLPAVVEHAPVGFVAGASASAPAKGGIGTMHAPNLSNRYFRHIIHCRSCSNVIKSFQTWNKALSAIAITLVALAILVVGRQWKVLILLSAALCYGGAYACSSIVALNTTNFIRTHRRL 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24387388 24390369 + Sed0027737.1 Sed13g1947 735457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1947 591 SUPERFAMILY Bet v1-like 242 460 - -
Sed13g1947 591 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 141 246 IPR017941 GO:0051537(InterPro)
Sed13g1947 591 Pfam Pheophorbide a oxygenase 345 430 IPR013626 GO:0010277(InterPro)
Sed13g1947 591 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 100 542 IPR050584 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016491(PANTHER)|GO:0045036(PANTHER)
Sed13g1947 591 SUPERFAMILY ISP domain 134 254 IPR036922 GO:0051537(InterPro)
Sed13g1947 591 Pfam Rieske [2Fe-2S] domain 140 222 IPR017941 GO:0051537(InterPro)
Sed13g1947 591 Gene3D - 268 459 - -
Sed13g1947 591 Gene3D - 136 265 IPR036922 GO:0051537(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1947 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0786 Sed-Chr3:4743376 Sed13g1947 Sed-Chr13:24387388 4.80E-29 dispersed
Sed03g0787 Sed-Chr3:4743376 Sed13g1947 Sed-Chr13:24387388 3.80E-23 dispersed
Sed12g1652 Sed-Chr12:27718662 Sed13g1947 Sed-Chr13:24387388 4.20E-44 dispersed
Sed13g1947 Sed-Chr13:24387388 Sed12g1651 Sed-Chr12:27718662 1.10E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g610 Blo01g01424 Blo12g01041 Bda01g00654 . . Bpe02g00226 . Bma01g02181 . . . . Car09g00342 . . . Cpe06g00281 . . . . . . . Cla05g01660 Cam05g1771 Cec05g1779 Cco05g1838 Clacu05g1761 Cmu05g1647 Cre05g1775 Cone4ag1731 Cone7ag1650 . . Lsi04g01356 . . . . . . . . Bpe04g00097 . . Sed13g1947 . Cmo09g00395 Cma09g00393 . . . . . Bhi09g03043 Tan01g3529 Cmetu07g0445 . Hepe01g1944 Mch11g0480 . . . . . . . . . . . Cme07g00144
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009854 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 33