Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1952 ATGTCCCAAAGGATCCCATCTTATTCTAACCCAACACCGTGCAATCATCTCGCTGATTACAAGCTCAGATATGGCTTAAACGGCTATAAATCCATTCAAAATCACCTCAAAACTACCCCAAATGGCAGAATCAGTATTCAAAACCCCGATTCCAAGATACCCAGATGCTGTTCTTGTGATGGGTTTCAAGGAAATCTTTACATATGTTTGATCTGTGCTTCCATCTCTTGCTCAAATCATACGTTTCTTCATTACCAGTCTCAACATGGCCATGATTTGGCCGTTGATGTTGAGAGAGCTGAGCTATATTGCTATGCTTGTTCCGATCAGGTTTACGACCCCGATTTCGATCGGATGGTGATGTCGAAGCACATCGCCGCGGCCGGACCCGAGAAATCGAGTATTGGGGAGAGATCGAGCAAGAGAAGGAGATTGGGGTCGTTGGATTTGAAGAAATTGAAACCGTTGGTTTCGGTTAAAGATCAGCGGTCGAAATCTTGTTATCCTTTGGGATTAAGGGGATTGAATAATTTGGGGAATACTTGTTTTATGAATTCTGTTCTTCAAGTGCTGCTTCACACTCCTCCTTTGAGTAATTACTTTTTGAATGATCAGCACAACCGTGAAAGTTGCAGTAAAAGAACCATTGGGCAGCTTTGTTTGTCTTGTGATATTGATTCTATTTTCTCTGCTGTGTTTTCTGGTGATCATTTGCCTTATAGTCCAGCTCGATTTCTCTACAGTTGGTGGCAGCACTCTGCAAATTTAGCATGTTATGAGCAGCAGGATGCCCACGAGTTCTTCATCTCGGTTTTAGACCGAATCCACGAGCAAGAATGGAAATCTAGAAGCCAAGATCAAGCTAATGGAGACTGCAAATGCATTGCTCACAAGGCCTTCTCTGGACAGTTGAGATCAGATGTCACTTGTATGACCTGTGGATTTACTTCAACAACTTATGATCCATGTGTGGATATTTCACTTGACTTGGACTCCCAGGATTTCTCTTCTAGAAATGTCGCTGGCAAGTCGACGAAGCCGGCGGACTTCACCAGTAAATCTACGTTATCGGGTTGTTTGGATCTGTTCACAAGACCTGAAAAGTTGGGATCGGACCAGAAACTTTTCTGCCAAAATTGTCAAGAAATGAGAAATTCAGTGAAGCAAATGTCTATTAGAAGGCTGCCATCAGTTTTGTGTTTGCACATCAAACGATTTGAGCACTCATTTGTCAGGCGAACGTCAAGAAAAATCGATCGGTATTTGCAGTTTCCTTTTTCCCTGGACATGATCCCGTACCTGTCGTCTTCTATTATCAGAAACAGGTATGGAAATAGGATTTTTGCTTCTGAGGGAGATGAATTGGATACTTCATCGAAGTTCGAGATTTTCGCTGTGGTTTCTCATTCCGGGACGCTTGAGTCTGGCCATTACGTGACGTACTTGCGTTTGAGGAATCGATGGTATAAATGTGACGATGCCTGGATTACGGAAGTCGATGAAGAAATGGTGAGAAATTCTCAATGTTACATGATGTTTTATCTACAGAACACAGCCAGCTACAAATCAAACGAGGATTTGACCTGCCTTTCTATTTCCCCACGCAATGATGCATACCAACAGATTGCTGGTTGCTGTTGA 1641 42.78 MSQRIPSYSNPTPCNHLADYKLRYGLNGYKSIQNHLKTTPNGRISIQNPDSKIPRCCSCDGFQGNLYICLICASISCSNHTFLHYQSQHGHDLAVDVERAELYCYACSDQVYDPDFDRMVMSKHIAAAGPEKSSIGERSSKRRRLGSLDLKKLKPLVSVKDQRSKSCYPLGLRGLNNLGNTCFMNSVLQVLLHTPPLSNYFLNDQHNRESCSKRTIGQLCLSCDIDSIFSAVFSGDHLPYSPARFLYSWWQHSANLACYEQQDAHEFFISVLDRIHEQEWKSRSQDQANGDCKCIAHKAFSGQLRSDVTCMTCGFTSTTYDPCVDISLDLDSQDFSSRNVAGKSTKPADFTSKSTLSGCLDLFTRPEKLGSDQKLFCQNCQEMRNSVKQMSIRRLPSVLCLHIKRFEHSFVRRTSRKIDRYLQFPFSLDMIPYLSSSIIRNRYGNRIFASEGDELDTSSKFEIFAVVSHSGTLESGHYVTYLRLRNRWYKCDDAWITEVDEEMVRNSQCYMMFYLQNTASYKSNEDLTCLSISPRNDAYQQIAGCC 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24424911 24428978 + Sed0011564.1 Sed13g1952 735462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1952 546 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270(InterPro)
Sed13g1952 546 ProSiteProfiles Zinc finger UBP-type profile. 31 136 IPR001607 GO:0008270(InterPro)
Sed13g1952 546 SUPERFAMILY RING/U-box 12 118 - -
Sed13g1952 546 FunFam Ubiquitinyl hydrolase 1 8 128 - -
Sed13g1952 546 FunFam Ubiquitinyl hydrolase 1 167 522 - -
Sed13g1952 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 129 IPR013083 -
Sed13g1952 546 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 173 517 IPR028889 -
Sed13g1952 546 Pfam Ubiquitin carboxyl-terminal hydrolase 173 514 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Sed13g1952 546 SUPERFAMILY Cysteine proteinases 169 514 IPR038765 -
Sed13g1952 546 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 65 518 IPR050185 -
Sed13g1952 546 Gene3D Cysteine proteinases 168 524 - -
Sed13g1952 546 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 174 189 IPR018200 GO:0004843(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1952 K11366 - - csv:101210858 1031.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1470 Sed-Chr10:31088645 Sed13g1952 Sed-Chr13:24424911 5.70E-164 dispersed
Sed12g0375 Sed-Chr12:2287698 Sed13g1952 Sed-Chr13:24424911 4.70E-14 dispersed
Sed13g0671 Sed-Chr13:4613157 Sed13g1952 Sed-Chr13:24424911 1.00E-33 dispersed
Sed13g1210 Sed-Chr13:17459387 Sed13g1952 Sed-Chr13:24424911 1.30E-13 dispersed
Sed13g1211 Sed-Chr13:17459387 Sed13g1952 Sed-Chr13:24424911 1.30E-13 dispersed
Sed13g1952 Sed-Chr13:24424911 Sed03g2913 Sed-Chr3:46274726 3.60E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g597 Blo01g01420 . Bda01g00659 . . Bpe02g00532 . . . . . . Car09g00347 . . . . . . . . . . . Cla05g01666 Cam05g1780 Cec05g1786 Cco05g1846 Clacu05g1769 Cmu05g1653 Cre05g1782 . Cone7ag1656 . . Lsi04g01349 Csa03g04488 Chy04g00212 . . . . . . . . . Sed13g1952 . Cmo09g00400 . . . . . . Bhi09g03035 Tan01g3536 Cmetu07g1151 . Hepe01g1951 Mch11g0488 . . . . . . . . . . . Cme07g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012836 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 0 1 1 1 0 1 1 1 1 28