Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1954 | ATGCAGGCAGATCCATCGGCGATAAGTTTGAGACCAGGCGGCGGCGGCTTTCGTGGCCGCAGATTTGCGACTCCTCGCTTCGATTTCTCCTCCGCCGATTCCGCCTCGCTTCGCCCTCATGGCGGCGCTGCCTCAATCCTCAAGACCGGAGATCTACGATTTGAAGGCCGTGAACGAATCCAGTACACCCGAGACCAGCTTCTGCGGCTTAGAGAGGTTGCAACAGTCCCCGAGGATATCTTAAAGGTCAAAATAGAAGTCGAGACTGAGATTGCTGGGGAGGATCAAACATGGGCTCGTGTTGAAAGCATTCAATCACAATCTCAAAGCCGTTATTTTGAGTCAGACAATCGAGATTGGCGTGGTCGATCTGGAGAGGAAGGATCTTGGGAGGCTACTCGTGAAGATAAGGATTTATCCGGACAATCTGAGTCAAGGTTGCATGACTCAAACAGTAGGACCCAAGTTTCTGGTAACCAAGGGGTCAGTACTGCAGCTGCCCTCATCAAGGCTGAAGTTCCTTGGTCAGTTAGCAGAGGTAATATCTCAGACAAGGAACGTGTTTTGAAGACAGTAAAAGGTATACTTAATAAATTGACTCCAGAAAAGTTTGACGTACTCAAGGGTCAACTGATTGACTCTGGAATTGTATCCGCTGATATTTTGAAGGATGTTATATCACTTATATTTGAGAAGGCGGTGTTTGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTCTGACCTTAATGAGAAACTTCCTCCATTTCCATCTGATGTGCCTGGAGAGAAAGATGTCACTTTTAAACGGGTTCTCTTAAATATTTGCCAAGAGGCATTTGATGGTGCTAAGCACATGAGGGCAGAAATCGAGCGGATGACTAATCCCGATCAGGAAAGGGAAAGAAGAAATAAAGAAAGAAGGGTTAAGCTTCGAACTCTAGGAAACATTCGCTTGATAGGTGAGCTTCTTAAACAGAAGATGGTTCCTGAAAGGATTATTCACCATATTGTTCTGGAGTTGTTGGGCTCTGATGTTAAAGCAAGCTGCCCGGCTGAGGAGAATGTTGAGGCTATTTGTCAGTTTTTTAACACAATCGGTAAGCAGCTGGATGAGAGCCAAAAATCTCGGCGGGTAAATGAAGTATATTTCAACCAGTTGAAGGAGCTCGCTGCAAACACTCAACTAGCACCTAGGTTGAGATTTATGGTTCGTGATGTTCTTGATTTACGGGCCAATAAATGGGTTCCTAGGCGCGAAGAGGTGAAAGCAAAAACCATCACTGAAATTCATTCAGAGGCCGAGAAGAATCTCGGTCTTCGTCCAGGTTCAATGGCAATGATGAGAAATGGCCATAATGCCGAGGCAGCTGGGGGATTAAGCACTGGTGGTTTTCCTGTTGCTCGACCTGGCTTCGGGGGTATGATGCCTGGAATGCCTCCTGGGACCAGAAAAATGCCTGGTATGCCTGGACTCGATTCAGACGACTGGGAGGTTCCTAGATCCCGATCAATGCCAAGGGGCGAAAACAGAGGGTCAGCGCGTGTCCAGACACCATCAACCGGCAAAACACCTTCCGTTAATTCAAAATATCTACCTCAGGGAAGTGGTGGTGTAATAACTGGGAAAACAAGTGCCTTGCTAGGCACTGCTGCATCTCCTGCCCGATCGAGTTCCATGCCTCGAACGCAGCCTGTCGCTCACAATCCTAGACCGGTTGCTCCTGTTCCATCTGTCATATCCTCTCCTCAGAAGCCAACAGCACCTGCTGCTGTCACATCCAATTCTGTTGACCTTCACAAGAAAACCGTTTCGCTGCTCGAGGAATACTTTAGTGTTCGGATTCTCGAGGAAGCTCTTCAGTGTGTAGAGGAGCTGAAATCCCCATCTTATCACCCTGAGGTTGTCAAAGAATCTCTTGCCATAGCACTTGAAAAGATTCCACCCTGTGTAGACCCAGTTGTTAAGCTTCTTGAGCACCTGCTTAAGAAAAATGTCTTGACTGCAAAGGATATAGGTACCGGATGCCTTCTTTATGGGTCAATGATGGATGACATCGGCATTGATCTACCAAAAGCGCCAAACAATTTCGGTGAGATCCTCGGGAAGTTAATATTGATCGGGGGTCTGGATTTTGCAGTCGTGAAGGAGATAGTTCAGAAGCTTGAAGATGACTTTTTCAAGAAGGCCATTTTTGGTGGTGCTAAGAAGAGCCTCAACTCTAGCCCTTCTGGAGAGAAAATTCTCCAGACTCAAAGTATTGAAATCCAGGCATGTGAGAATTTACTTAAGTGA | 2298 | 46.78 | MQADPSAISLRPGGGGFRGRRFATPRFDFSSADSASLRPHGGAASILKTGDLRFEGRERIQYTRDQLLRLREVATVPEDILKVKIEVETEIAGEDQTWARVESIQSQSQSRYFESDNRDWRGRSGEEGSWEATREDKDLSGQSESRLHDSNSRTQVSGNQGVSTAAALIKAEVPWSVSRGNISDKERVLKTVKGILNKLTPEKFDVLKGQLIDSGIVSADILKDVISLIFEKAVFEPTFCPMYALLCSDLNEKLPPFPSDVPGEKDVTFKRVLLNICQEAFDGAKHMRAEIERMTNPDQERERRNKERRVKLRTLGNIRLIGELLKQKMVPERIIHHIVLELLGSDVKASCPAEENVEAICQFFNTIGKQLDESQKSRRVNEVYFNQLKELAANTQLAPRLRFMVRDVLDLRANKWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGHNAEAAGGLSTGGFPVARPGFGGMMPGMPPGTRKMPGMPGLDSDDWEVPRSRSMPRGENRGSARVQTPSTGKTPSVNSKYLPQGSGGVITGKTSALLGTAASPARSSSMPRTQPVAHNPRPVAPVPSVISSPQKPTAPAAVTSNSVDLHKKTVSLLEEYFSVRILEEALQCVEELKSPSYHPEVVKESLAIALEKIPPCVDPVVKLLEHLLKKNVLTAKDIGTGCLLYGSMMDDIGIDLPKAPNNFGEILGKLILIGGLDFAVVKEIVQKLEDDFFKKAIFGGAKKSLNSSPSGEKILQTQSIEIQACENLLK | 765 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 24441564 | 24449806 | + | Sed0026059.1 | Sed13g1954 | 735464 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1954 | 765 | MobiDBLite | consensus disorder prediction | 552 | 572 | - | - | |
Sed13g1954 | 765 | MobiDBLite | consensus disorder prediction | 114 | 144 | - | - | |
Sed13g1954 | 765 | Pfam | MA3 domain | 601 | 712 | IPR003891 | - | |
Sed13g1954 | 765 | SUPERFAMILY | ARM repeat | 597 | 750 | IPR016024 | - | |
Sed13g1954 | 765 | Gene3D | - | 596 | 759 | - | - | |
Sed13g1954 | 765 | MobiDBLite | consensus disorder prediction | 145 | 159 | - | - | |
Sed13g1954 | 765 | Pfam | MIF4G domain | 189 | 415 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed13g1954 | 765 | Gene3D | - | 180 | 416 | - | - | |
Sed13g1954 | 765 | ProSiteProfiles | MI domain profile. | 599 | 721 | IPR003891 | - | |
Sed13g1954 | 765 | SMART | if4_15 | 189 | 415 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed13g1954 | 765 | MobiDBLite | consensus disorder prediction | 552 | 566 | - | - | |
Sed13g1954 | 765 | FunFam | Eukaryotic translation initiation factor isoform 4G-2 | 180 | 416 | - | - | |
Sed13g1954 | 765 | SUPERFAMILY | ARM repeat | 181 | 418 | IPR016024 | - | |
Sed13g1954 | 765 | MobiDBLite | consensus disorder prediction | 112 | 159 | - | - | |
Sed13g1954 | 765 | MobiDBLite | consensus disorder prediction | 512 | 538 | - | - | |
Sed13g1954 | 765 | SMART | ma3_7 | 600 | 712 | IPR003891 | - | |
Sed13g1954 | 765 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 124 | 761 | IPR045208 | GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER) | |
Sed13g1954 | 765 | MobiDBLite | consensus disorder prediction | 485 | 538 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1754 | Sed-Chr5:31346957 | Sed13g1954 | Sed-Chr13:24441564 | 0.00E+00 | dispersed | |
Sed12g0327 | Sed-Chr12:2042994 | Sed13g1954 | Sed-Chr13:24441564 | 3.10E-53 | dispersed | |
Sed12g2281 | Sed-Chr12:33023449 | Sed13g1954 | Sed-Chr13:24441564 | 1.80E-242 | dispersed | |
Sed13g1954 | Sed-Chr13:24441564 | Sed05g1753 | Sed-Chr5:31346957 | 0.00E+00 | wgd | |
Sed13g1954 | Sed-Chr13:24441564 | Sed08g0571 | Sed-Chr8:3867217 | 4.30E-249 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1954 | K03260 | - | csv:101211356 | 1142.1 |