Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1954 ATGCAGGCAGATCCATCGGCGATAAGTTTGAGACCAGGCGGCGGCGGCTTTCGTGGCCGCAGATTTGCGACTCCTCGCTTCGATTTCTCCTCCGCCGATTCCGCCTCGCTTCGCCCTCATGGCGGCGCTGCCTCAATCCTCAAGACCGGAGATCTACGATTTGAAGGCCGTGAACGAATCCAGTACACCCGAGACCAGCTTCTGCGGCTTAGAGAGGTTGCAACAGTCCCCGAGGATATCTTAAAGGTCAAAATAGAAGTCGAGACTGAGATTGCTGGGGAGGATCAAACATGGGCTCGTGTTGAAAGCATTCAATCACAATCTCAAAGCCGTTATTTTGAGTCAGACAATCGAGATTGGCGTGGTCGATCTGGAGAGGAAGGATCTTGGGAGGCTACTCGTGAAGATAAGGATTTATCCGGACAATCTGAGTCAAGGTTGCATGACTCAAACAGTAGGACCCAAGTTTCTGGTAACCAAGGGGTCAGTACTGCAGCTGCCCTCATCAAGGCTGAAGTTCCTTGGTCAGTTAGCAGAGGTAATATCTCAGACAAGGAACGTGTTTTGAAGACAGTAAAAGGTATACTTAATAAATTGACTCCAGAAAAGTTTGACGTACTCAAGGGTCAACTGATTGACTCTGGAATTGTATCCGCTGATATTTTGAAGGATGTTATATCACTTATATTTGAGAAGGCGGTGTTTGAGCCCACATTTTGCCCTATGTATGCACTTTTGTGCTCTGACCTTAATGAGAAACTTCCTCCATTTCCATCTGATGTGCCTGGAGAGAAAGATGTCACTTTTAAACGGGTTCTCTTAAATATTTGCCAAGAGGCATTTGATGGTGCTAAGCACATGAGGGCAGAAATCGAGCGGATGACTAATCCCGATCAGGAAAGGGAAAGAAGAAATAAAGAAAGAAGGGTTAAGCTTCGAACTCTAGGAAACATTCGCTTGATAGGTGAGCTTCTTAAACAGAAGATGGTTCCTGAAAGGATTATTCACCATATTGTTCTGGAGTTGTTGGGCTCTGATGTTAAAGCAAGCTGCCCGGCTGAGGAGAATGTTGAGGCTATTTGTCAGTTTTTTAACACAATCGGTAAGCAGCTGGATGAGAGCCAAAAATCTCGGCGGGTAAATGAAGTATATTTCAACCAGTTGAAGGAGCTCGCTGCAAACACTCAACTAGCACCTAGGTTGAGATTTATGGTTCGTGATGTTCTTGATTTACGGGCCAATAAATGGGTTCCTAGGCGCGAAGAGGTGAAAGCAAAAACCATCACTGAAATTCATTCAGAGGCCGAGAAGAATCTCGGTCTTCGTCCAGGTTCAATGGCAATGATGAGAAATGGCCATAATGCCGAGGCAGCTGGGGGATTAAGCACTGGTGGTTTTCCTGTTGCTCGACCTGGCTTCGGGGGTATGATGCCTGGAATGCCTCCTGGGACCAGAAAAATGCCTGGTATGCCTGGACTCGATTCAGACGACTGGGAGGTTCCTAGATCCCGATCAATGCCAAGGGGCGAAAACAGAGGGTCAGCGCGTGTCCAGACACCATCAACCGGCAAAACACCTTCCGTTAATTCAAAATATCTACCTCAGGGAAGTGGTGGTGTAATAACTGGGAAAACAAGTGCCTTGCTAGGCACTGCTGCATCTCCTGCCCGATCGAGTTCCATGCCTCGAACGCAGCCTGTCGCTCACAATCCTAGACCGGTTGCTCCTGTTCCATCTGTCATATCCTCTCCTCAGAAGCCAACAGCACCTGCTGCTGTCACATCCAATTCTGTTGACCTTCACAAGAAAACCGTTTCGCTGCTCGAGGAATACTTTAGTGTTCGGATTCTCGAGGAAGCTCTTCAGTGTGTAGAGGAGCTGAAATCCCCATCTTATCACCCTGAGGTTGTCAAAGAATCTCTTGCCATAGCACTTGAAAAGATTCCACCCTGTGTAGACCCAGTTGTTAAGCTTCTTGAGCACCTGCTTAAGAAAAATGTCTTGACTGCAAAGGATATAGGTACCGGATGCCTTCTTTATGGGTCAATGATGGATGACATCGGCATTGATCTACCAAAAGCGCCAAACAATTTCGGTGAGATCCTCGGGAAGTTAATATTGATCGGGGGTCTGGATTTTGCAGTCGTGAAGGAGATAGTTCAGAAGCTTGAAGATGACTTTTTCAAGAAGGCCATTTTTGGTGGTGCTAAGAAGAGCCTCAACTCTAGCCCTTCTGGAGAGAAAATTCTCCAGACTCAAAGTATTGAAATCCAGGCATGTGAGAATTTACTTAAGTGA 2298 46.78 MQADPSAISLRPGGGGFRGRRFATPRFDFSSADSASLRPHGGAASILKTGDLRFEGRERIQYTRDQLLRLREVATVPEDILKVKIEVETEIAGEDQTWARVESIQSQSQSRYFESDNRDWRGRSGEEGSWEATREDKDLSGQSESRLHDSNSRTQVSGNQGVSTAAALIKAEVPWSVSRGNISDKERVLKTVKGILNKLTPEKFDVLKGQLIDSGIVSADILKDVISLIFEKAVFEPTFCPMYALLCSDLNEKLPPFPSDVPGEKDVTFKRVLLNICQEAFDGAKHMRAEIERMTNPDQERERRNKERRVKLRTLGNIRLIGELLKQKMVPERIIHHIVLELLGSDVKASCPAEENVEAICQFFNTIGKQLDESQKSRRVNEVYFNQLKELAANTQLAPRLRFMVRDVLDLRANKWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGHNAEAAGGLSTGGFPVARPGFGGMMPGMPPGTRKMPGMPGLDSDDWEVPRSRSMPRGENRGSARVQTPSTGKTPSVNSKYLPQGSGGVITGKTSALLGTAASPARSSSMPRTQPVAHNPRPVAPVPSVISSPQKPTAPAAVTSNSVDLHKKTVSLLEEYFSVRILEEALQCVEELKSPSYHPEVVKESLAIALEKIPPCVDPVVKLLEHLLKKNVLTAKDIGTGCLLYGSMMDDIGIDLPKAPNNFGEILGKLILIGGLDFAVVKEIVQKLEDDFFKKAIFGGAKKSLNSSPSGEKILQTQSIEIQACENLLK 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24441564 24449806 + Sed0026059.1 Sed13g1954 735464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1954 765 MobiDBLite consensus disorder prediction 552 572 - -
Sed13g1954 765 MobiDBLite consensus disorder prediction 114 144 - -
Sed13g1954 765 Pfam MA3 domain 601 712 IPR003891 -
Sed13g1954 765 SUPERFAMILY ARM repeat 597 750 IPR016024 -
Sed13g1954 765 Gene3D - 596 759 - -
Sed13g1954 765 MobiDBLite consensus disorder prediction 145 159 - -
Sed13g1954 765 Pfam MIF4G domain 189 415 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed13g1954 765 Gene3D - 180 416 - -
Sed13g1954 765 ProSiteProfiles MI domain profile. 599 721 IPR003891 -
Sed13g1954 765 SMART if4_15 189 415 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed13g1954 765 MobiDBLite consensus disorder prediction 552 566 - -
Sed13g1954 765 FunFam Eukaryotic translation initiation factor isoform 4G-2 180 416 - -
Sed13g1954 765 SUPERFAMILY ARM repeat 181 418 IPR016024 -
Sed13g1954 765 MobiDBLite consensus disorder prediction 112 159 - -
Sed13g1954 765 MobiDBLite consensus disorder prediction 512 538 - -
Sed13g1954 765 SMART ma3_7 600 712 IPR003891 -
Sed13g1954 765 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 124 761 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Sed13g1954 765 MobiDBLite consensus disorder prediction 485 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1754 Sed-Chr5:31346957 Sed13g1954 Sed-Chr13:24441564 0.00E+00 dispersed
Sed12g0327 Sed-Chr12:2042994 Sed13g1954 Sed-Chr13:24441564 3.10E-53 dispersed
Sed12g2281 Sed-Chr12:33023449 Sed13g1954 Sed-Chr13:24441564 1.80E-242 dispersed
Sed13g1954 Sed-Chr13:24441564 Sed05g1753 Sed-Chr5:31346957 0.00E+00 wgd
Sed13g1954 Sed-Chr13:24441564 Sed08g0571 Sed-Chr8:3867217 4.30E-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1954 K03260 - csv:101211356 1142.1