Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1955 ATGGGTATATACCTCAGCAATCCCAAGACCGAGAAGTTCTCTGAAGATGGCGATAATAGACGGCTTAGATATGGACTATCGTCAATGCAAGGGTGGCGTGCCACAATGGAAGATGCTCATGCTGCAATTCTTGATTTGGATGCTGGTACTTCCTTCTTTGGTGTTTATGATGGCCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCCAAGTATCTACATCAGCAAGTGAAGAAAAATGTAGCTTATGCAGCTGCAGATATAGGAACTTCTGTGCAGAAAGCGTTTTTAAGAATGGATGAAATGATGTGTGGACAAAGAGGTTGGAGAGAATTAGCTATTTTGGGCGATAGATTGAACAAGTTGACTGGCATAATAGAAGGCTTAATCTGGTCACCAAGAAGCAGTGATGCAAATGACCAAGCTGATGATTGGGCTTTTGAGGAGGGTCCACACTCCGATTTTTCCGGCCCAACTTCGGGGTGTACAGCTTGTGTTGCTATTGTTAGAAATAACAAACTTATTGTTGCAAATGCTGGCGATTCACGTTGTGTGATATCAAGAAAGGGCCAGGCACACAGTCTCTCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAGTTTTTACCTGCTGAAAAGCAAATTATCACTGCAAACCCTGATGTAACCACTGTCGAGATTTGCGATGATGACGAGTTTATTGTGGTAGCTTGTGATGGTATATGGGATTGCATGTCTAACCAGCAGTTGGTAGATTTTATACATGAACAGCTAAAATCAGAAAGTAAGCTCTCTGTGGTTGTTGAGAGAGTACTTGATAGGTGTTTGGCACCTTCCACAGCTGGTGGGGAGGGATGTGATAATATGACCATGATTTTGGTGCAGCTTAAGAAAGATATCCCATCAAGCTCCCCTGTCAACTATCAAACTTCAACCTCGACTATCACAGCCGAACCAGACAGTATCGAGTCGAAGGGAAGAAATGAATCAAACTAG 1095 42.92 MGIYLSNPKTEKFSEDGDNRRLRYGLSSMQGWRATMEDAHAAILDLDAGTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNVAYAAADIGTSVQKAFLRMDEMMCGQRGWRELAILGDRLNKLTGIIEGLIWSPRSSDANDQADDWAFEEGPHSDFSGPTSGCTACVAIVRNNKLIVANAGDSRCVISRKGQAHSLSKDHKPDLEVEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIITANPDVTTVEICDDDEFIVVACDGIWDCMSNQQLVDFIHEQLKSESKLSVVVERVLDRCLAPSTAGGEGCDNMTMILVQLKKDIPSSSPVNYQTSTSTITAEPDSIESKGRNESN 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24458326 24467021 + Sed0021743.1 Sed13g1955 735465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1955 364 Gene3D - 1 330 IPR036457 -
Sed13g1955 364 CDD PP2Cc 23 329 IPR001932 -
Sed13g1955 364 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Sed13g1955 364 PANTHER PROTEIN PHOSPHATASE 2C 20 330 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed13g1955 364 Pfam Protein phosphatase 2C 135 313 IPR001932 -
Sed13g1955 364 Pfam Protein phosphatase 2C 23 102 IPR001932 -
Sed13g1955 364 MobiDBLite consensus disorder prediction 334 354 - -
Sed13g1955 364 SMART PP2C_4 13 327 IPR001932 -
Sed13g1955 364 MobiDBLite consensus disorder prediction 334 364 - -
Sed13g1955 364 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169(InterPro)
Sed13g1955 364 SUPERFAMILY PP2C-like 3 330 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0730 Sed-Chr7:5471313 Sed13g1955 Sed-Chr13:24458326 4.10E-157 dispersed
Sed13g1955 Sed-Chr13:24458326 Sed13g2205 Sed-Chr13:26558900 6.00E-31 dispersed
Sed13g1955 Sed-Chr13:24458326 Sed13g1956 Sed-Chr13:24458326 1.40E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1955 K17499 - csv:101211604 636.336