Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1956 ATGGGTATATACCTCAGCAATCCCAAGACCGAGAAGTTCTCTGAAGATGGCGATAATAGACGGCTTAGATATGGACTATCGTCAATGCAAGGGTGGCGTGCCACAATGGAAGATGCTCATGCTGCAATTCTTGATTTGGATGCTGGTACTTCCTTCTTTGGTGTTTATGATGGCCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCCAAGTATCTACATCAGCAAGTGAAGAAAAATGTAGCTTATGCAGCTGCAGATATAGGAACTTCTGTGCAGAAAGCGTTTTTAAGAATGGATGAAATGATGTGTGGACAAAGAGGTTGGAGAGAATTAGCTATTTTGGGCGATAGATTGAACAAGTTGACTGGCATAATAGAAGGCTTAATCTGGTCACCAAGAAGCAGTGATGCAAATGACCAAGCTGATGATTGGGCTTTTGAGGAGGGTCCACACTCCGATTTTTCCGGCCCAACTTCGGGGTGTACAGCTTGTGTTGCTATTGTTAGAAATAACAAACTTATTGTTGCAAATGCTGGCGATTCACGTTGTGTGATATCAAGAAAGGGCCAGGCACACAGTCTCTCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGAATTCTGAAAGCTGGTGGTTTTATTCATGCTGGACGAGTCAATGGTAGCTTGAACCTTGCCAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAGTTTTTACCTGCTGAAAAGCAAATTATCACTGCAAACCCTGATGTAACCACTGTCGAGATTTGCGATGATGACGAGTTTATTGTGGTAGCTTGTGATGGTATATGGTATGTATCTACTGTTCCTTCTCAGCTTTGTCTTTATTTATTTTACTTATTTTTATTACACGTCCATATAATTTTATTTGGTATTTTCATCAATCAAGGATAA 927 40.88 MGIYLSNPKTEKFSEDGDNRRLRYGLSSMQGWRATMEDAHAAILDLDAGTSFFGVYDGHGGKVVAKFCAKYLHQQVKKNVAYAAADIGTSVQKAFLRMDEMMCGQRGWRELAILGDRLNKLTGIIEGLIWSPRSSDANDQADDWAFEEGPHSDFSGPTSGCTACVAIVRNNKLIVANAGDSRCVISRKGQAHSLSKDHKPDLEVEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIITANPDVTTVEICDDDEFIVVACDGIWYVSTVPSQLCLYLFYLFLLHVHIILFGIFINQG 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24458326 24467021 + Sed0021743.2 Sed13g1956 735466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1956 308 ProSiteProfiles PPM-type phosphatase domain profile. 23 308 IPR001932 -
Sed13g1956 308 PANTHER PROTEIN PHOSPHATASE 2C 20 278 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed13g1956 308 CDD PP2Cc 23 275 IPR001932 -
Sed13g1956 308 SUPERFAMILY PP2C-like 3 278 IPR036457 -
Sed13g1956 308 Pfam Protein phosphatase 2C 135 277 IPR001932 -
Sed13g1956 308 Pfam Protein phosphatase 2C 23 102 IPR001932 -
Sed13g1956 308 SMART PP2C_4 13 305 IPR001932 -
Sed13g1956 308 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169(InterPro)
Sed13g1956 308 Gene3D - 1 284 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1956 Sed-Chr13:24458326 Sed13g2205 Sed-Chr13:26558900 1.10E-25 dispersed
Sed13g1955 Sed-Chr13:24458326 Sed13g1956 Sed-Chr13:24458326 1.40E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1956 K17499 - csv:101211604 515.768