Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed13g1963 | ATGGGGACATCAGGCGGAAAGAACGATATAGAGATGAATAGTGATCCAGAAGACTTTGGAAGTGATATGGATACAGACGATGATGATTATTCTGAACCAGTCAACATACATGATCTTGGGGAAGGTTTTTTGAACGATTTCTGTAAGAAGTCATCAATGGCATTTTTTAAACAGTACGGCCTTATCAGTCACCAAATTAACTCATACAATGAATTCGTAAAAAGTGGTATTCAGAAGGCATTTGATTACTTCGGTGAGATTGTAGTTCAGCCTGGGTACGATCCTTCGAAGAAAGGAGATGGGGAATGGAGATATGCTTCAGTGAAGTTTGGTAAGGTAACCCTTGATAAGCCTATGTTCTGGGGTGGTGCAGCCAGTGGAAAAGAGTATAACATGCTTCCGAGGCATGCTCGACTTCAAAATATGACTTATTCATCAAGGATGAAAATGAGTATTAATGTTGAGGTGTATACTCAAAGGTTAGTCAGTAGTGACAAATTTAAAACTGGGAAAGATAAATATGTCGACAAGGATCTTTTAAATCAAGACAACAGGGATATATTTATAGGCAGGCTACCTGTGATGGTGAATTCTGACCTTTGCTGGATGAAGGAAGAGCAGAAACGTGACTGTGAATATGATCATGGAGGTTATTTTTTAATCAAAGGTGCAGAAAAAATATTTATTGCTCAAGAACAAATTTGTTTGAAAAGACTCTGGATATCTAATGTTCAAGGTTGGACTGTGGCATACAGATCAGAGTCTAAGAGAAATAGACTAATTATTAAACTAGTTGAGAATTCCAAGTCTGAAGAACTAAGAAGCCTGGAGAAAGTTCTCAATGTATATTTCTTATCTACAGAAATTCCTGTGTGGATTTTATTTTTTGCACTTGGTGTTTCATCAGACAAAGAAATAGTAGATTTAATTGATTTTGGCAGAGATGATCCAACCATTCTGAATATTCTCTTTGCCTCTGTTCGTGAAGTCGATAATGATGATAAGTGGAAAGACTTTAGAAGAGGTAAAAGAGCTCTGAACTTTTTGGAGAATGAAGTTAAAAAGACCAGCTTCCCACCTGCTGAACCAATTGAGGAGTGCCTGAACCTCTATCTTTTTACCAGCTTGAAAGGTTTAAAGCAGAAATGTCGTTTCCTTGGTTATATGGTTAAATGTCTCCTGCAGGCCTATACTGGCCGTAGGAAATGTGATAACAGGGATGATTTTCGCAATAAAAGGTTTGAGTTGGCTTCGGAATTGCTTGAAAGAGAGATTAAAGTACATATTGCACATGCACGTAGGCGTATGGAAAAGGCTTTGCAAAGGGACCTCTATGGAGATCGTGATGTGCGTCCAATCGAACATTATTTTGATGCTTCCATAATCACTAATGGTCTATCCCGAGCATTCTCTACTGGAGCATGGGCACATCCTTTCAAGAGGATGGAAAGGATTTCAGGTGTGGTGGCCACGCTTGGTCGTGCTAATCCCCTGCAGACAATGGCTGAGTTAAGGAGAACTCGTCAACAGGTTGCATACACTGGGAAAGTTGGTGATGCAAGATACCCGCATCCTTCTCACTGGGGAAGAGTTTGCTTTCTTTCCACCCCAGATGGTGAAAATTGTGGGCTTATAAAAAATTTGTCCATCACAGGACTTGTAAGCTTAAACACATTGAAGCCCATAGTTCCCACATTGTCTCGCTGTGGGATGGAAAATTTGGTGGACGATGCATCTACTTCCCTCAGTGGGAAGTACAAAATCTTTCTCAATGGGGAATGGGCTGGGGTTTGTGAAGATTCCATTTCATTTGTAACGAAAGTGAGACGCAAGCGTAGAAGGAATCCGCTACTGCATCAGGTAGAAGTCAAAAGAGATGAACAACTGAAAGAAGTACGTGTATTTTCCGACGCAGGAAGGATATTACGCCCGCTCTTAGTTGTAGAGAACTTAAACAGGATTGACAAGTCTAAGGGGGAAAGCAACACTTTTCAATCCCTTTTGGACAAGGGAATAATTGAATTTATTGGAACTGAGGAAGAAGAAGACTGCCGTACAGCTTGGAATATTAAGCAACTTAAGGAAGATGAAGGGACTACGAAATATTCCCATTGTGAACTTGATATGTCATTTTTATTAGGCTTAAGTTGTGGACTTGTCCCGTTTGCAAATCATGACCATGCCAGGAGGGCTCTGTTTCAATCCCAGAAACACTCTAACCAAGCTATTGGATTTTCGACAACTAATCTTAACTTCCGTGTAGATACTTTATCTCACCAGTTACACTATCCCCAAAGGCCACTGTTTCGTACGACGACTGCTGATTGCCTTGGGACACCTGGATTCCTGTCTTCTCATACTGGGATACTACCAAAACCCGAGTTCTATAATGGTCAGAATGCTATTGTGGCAGTCAATGTTCACCTTGGTTACAACCAAGAGGATTCATTAGTAATGAATCGGGCCTCTCTGGAGCGTGGCATGTTTCGGTCCGAGCATATTCGAAGTTATAAGGCTGACGTAGATAATAAAGACTCTTCCGAAAAGAGGAGGAAATCCGACGATGCTATAAATTTTGGCAAGACTCAAAGTAAAATCGGAAGAGTTGACAGCTTAGATGATGATGGCTTCCCTTACATCGGTGCAAACTTGCAAAGTGGAGACATTGTCATTGGTAGGTGTGCGGAATCTGGGGCCGATCACAGTATCAAACTGAAGCACACCGAGAAGGGTATGGTTCAGAAAGTTGTGCTCACATCTAATGACGACGGGAAGAACTTTGCTGTTGTAAGCCTTAGACAGGTTCGTTCCCCGTGTCTTGGAGACAAGTTTTCGAGTATGCATGGACAAAAGGGAGTTCTGGGCTTTTTGGAGTCCCAAGAGAATTTCCCATTCACCATCCAGGGGATAGTTCCAGATATCGTCATAAACCCACACGCTTTTCCTTCGCGACAAACACCTGGTCAACTCTTGGAAGCTGCTCTTGGGAAAGGGATTGCTGCTGGCGGTTCGCTGAAATATGCGACTCCTTTTTCCACTCCTACTGTTGATGCCATCACAGACCAGCTGCACAGGGCAGGGTTTTCAAGATGGGGAACAGAGAGGGTGTACAATGGCCGAACTGGCGAAATGATGCGGTCACTCATATTCATGGGTCCAACATTCTACCAGCGCTTAATCCACATGGCTGAAGACAAGGTCAAATTCCGTAACACTGGCCCCGTCCACCCTCTCACGAGGCAACCAGTCGCCGACCGAAAGCGTTTCGGTGGGATCAAGTTCGGGGAGATGGAGCGCGACTGTCTAATAGCTCATGGAGCCTCAGCCAACTTACACGAACGCTTGTTCACACTCAGCGACTCATCCCAGATGCACGTTTGCCAGAAATGCCAAAATGTAGCAAGCGTGATCCAACGATCGGTAGCTGGCGGGCGTAAGGTGAGGGGCCCGTACTGTCGGATTTGCGAGTCGGCAGATGACATAGTGAGGGTTAATGTACCGTATGGAGCGAAGTTGTTGTTCCAGGAGCTGTTCAGCATGGGCATCAATCTCAAGTTTGAAACAGAAGTGTGCTGA | 3576 | 43.32 | MGTSGGKNDIEMNSDPEDFGSDMDTDDDDYSEPVNIHDLGEGFLNDFCKKSSMAFFKQYGLISHQINSYNEFVKSGIQKAFDYFGEIVVQPGYDPSKKGDGEWRYASVKFGKVTLDKPMFWGGAASGKEYNMLPRHARLQNMTYSSRMKMSINVEVYTQRLVSSDKFKTGKDKYVDKDLLNQDNRDIFIGRLPVMVNSDLCWMKEEQKRDCEYDHGGYFLIKGAEKIFIAQEQICLKRLWISNVQGWTVAYRSESKRNRLIIKLVENSKSEELRSLEKVLNVYFLSTEIPVWILFFALGVSSDKEIVDLIDFGRDDPTILNILFASVREVDNDDKWKDFRRGKRALNFLENEVKKTSFPPAEPIEECLNLYLFTSLKGLKQKCRFLGYMVKCLLQAYTGRRKCDNRDDFRNKRFELASELLEREIKVHIAHARRRMEKALQRDLYGDRDVRPIEHYFDASIITNGLSRAFSTGAWAHPFKRMERISGVVATLGRANPLQTMAELRRTRQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSITGLVSLNTLKPIVPTLSRCGMENLVDDASTSLSGKYKIFLNGEWAGVCEDSISFVTKVRRKRRRNPLLHQVEVKRDEQLKEVRVFSDAGRILRPLLVVENLNRIDKSKGESNTFQSLLDKGIIEFIGTEEEEDCRTAWNIKQLKEDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSTTNLNFRVDTLSHQLHYPQRPLFRTTTADCLGTPGFLSSHTGILPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKDSSEKRRKSDDAINFGKTQSKIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLTSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAGGSLKYATPFSTPTVDAITDQLHRAGFSRWGTERVYNGRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHVCQKCQNVASVIQRSVAGGRKVRGPYCRICESADDIVRVNVPYGAKLLFQELFSMGINLKFETEVC | 1191 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 24499914 | 24507921 | - | Sed0003356.1 | Sed13g1963 | 735473 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed13g1963 | 1191 | Pfam | RNA polymerase Rpb2, domain 2 | 250 | 413 | IPR007642 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Sed13g1963 | 1191 | FunFam | DNA-directed RNA polymerase subunit beta | 819 | 937 | - | - | |
| Sed13g1963 | 1191 | Gene3D | - | 748 | 937 | IPR014724 | GO:0003899(InterPro) | |
| Sed13g1963 | 1191 | FunFam | DNA-directed RNA polymerase subunit beta | 403 | 591 | - | - | |
| Sed13g1963 | 1191 | Gene3D | RNA polymerase Rpb2, domain 2 | 241 | 403 | IPR037034 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Sed13g1963 | 1191 | CDD | RNA_pol_B_RPB2 | 61 | 1187 | IPR015712 | GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0032549(InterPro) | |
| Sed13g1963 | 1191 | Pfam | RNA polymerase beta subunit | 60 | 451 | IPR007644 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Sed13g1963 | 1191 | FunFam | DNA-directed RNA polymerase subunit beta | 1075 | 1189 | - | - | |
| Sed13g1963 | 1191 | Pfam | RNA polymerase Rpb2, domain 3 | 492 | 551 | IPR007645 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Sed13g1963 | 1191 | PANTHER | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 | 53 | 1188 | IPR015712 | GO:0001055(PANTHER)|GO:0003899(PANTHER)|GO:0003899(InterPro)|GO:0005665(PANTHER)|GO:0006351(InterPro)|GO:0032549(InterPro) | |
| Sed13g1963 | 1191 | Pfam | RNA polymerase Rpb2, domain 6 | 718 | 1088 | IPR007120 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Sed13g1963 | 1191 | Gene3D | - | 404 | 608 | - | - | |
| Sed13g1963 | 1191 | Gene3D | - | 53 | 235 | - | - | |
| Sed13g1963 | 1191 | Gene3D | - | 718 | 1074 | IPR037033 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Sed13g1963 | 1191 | Gene3D | RNA polymerase alpha subunit dimerisation domain | 1075 | 1189 | - | - | |
| Sed13g1963 | 1191 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Sed13g1963 | 1191 | Pfam | RNA polymerase Rpb2, domain 5 | 664 | 707 | IPR007647 | GO:0006351(InterPro) | |
| Sed13g1963 | 1191 | ProSitePatterns | RNA polymerases beta chain signature. | 941 | 953 | IPR007121 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Sed13g1963 | 1191 | Pfam | RNA polymerase Rpb2, domain 7 | 1090 | 1188 | IPR007641 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) | |
| Sed13g1963 | 1191 | FunFam | DNA-directed RNA polymerase subunit beta | 53 | 236 | - | - | |
| Sed13g1963 | 1191 | SUPERFAMILY | beta and beta-prime subunits of DNA dependent RNA-polymerase | 48 | 1189 | - | - | |
| Sed13g1963 | 1191 | Pfam | RNA polymerase Rpb2, domain 4 | 588 | 649 | IPR007646 | GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed13g1963 | K16252 | - | - | csv:101212812 | 2219.51 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed13g1963 | Sed-Chr13:24499914 | Sed14g1458 | Sed-Chr14:23054084 | 1.40E-190 | dispersed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi4g576 | Blo01g01419 | . | Bda01g00661 | . | . | Bpe02g00534 | . | Bma01g02175 | . | . | Cma01g01667 | . | Car09g00358 | . | . | . | . | . | . | . | . | . | . | . | Cla05g01679 | Cam05g1794 | Cec05g1802 | Cco05g1858 | Clacu05g1781 | Cmu05g1666 | Cre05g1796 | . | . | Cone17ag0982 | . | Lsi04g01338 | . | . | . | . | . | . | . | . | . | . | . | Sed13g1963 | Cmo01g01716 | Cmo09g00414 | Cma09g00409 | . | Car01g01281 | . | . | Cpe02g00323 | Bhi09g03010 | Tan01g3560 | Cmetu07g2167 | . | Hepe01g1964 | Mch11g0501 | . | . | . | . | . | . | . | . | . | . | . | Cme07g00123 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0010517 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3 | 1 | 32 |