Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1966 ATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCGCAACAGGCCGGAACCATCAGGAAGAACGGCTACATCGTCATCAAGAACCGTCCCTGCAAGGTGGTTGAGGTTTCAACTTCTAAGACCGGCAAGCACGGGCATGCTAAGTGTCACTTTGTGGGAATTGACATCTTCACTAACAAGAAGCTTGAAGATATCGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGACATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATTTGAGGCTCCCAACTGATGATAACCTGCTCACTCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTCGTCGTCTCGGTGATGTCTGCCATGGGAGAGGAACAAATCAACGCCCTGAAGGATATCGGGCCGAAGTAG 480 48.96 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24515985 24520219 - Sed0018573.1 Sed13g1966 735476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1966 159 MobiDBLite consensus disorder prediction 1 21 - -
Sed13g1966 159 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Sed13g1966 159 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Sed13g1966 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Sed13g1966 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Sed13g1966 159 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Sed13g1966 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Sed13g1966 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Sed13g1966 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Sed13g1966 159 Gene3D - 1 85 IPR014722 -
Sed13g1966 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Sed13g1966 159 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Sed13g1966 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Sed13g1966 159 CDD S1_eIF5A 86 156 - -
Sed13g1966 159 Gene3D - 86 158 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1496 Sed-Chr6:39663908 Sed13g1966 Sed-Chr13:24515985 3.60E-81 dispersed
Sed07g1964 Sed-Chr7:34323498 Sed13g1966 Sed-Chr13:24515985 1.50E-79 dispersed
Sed13g1966 Sed-Chr13:24515985 Sed05g1744 Sed-Chr5:31291390 2.30E-88 wgd
Sed13g1966 Sed-Chr13:24515985 Sed08g0584 Sed-Chr8:3976391 5.80E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1966 K03263 - mtr:25490487 317.005