Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1966 | ATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCGCAACAGGCCGGAACCATCAGGAAGAACGGCTACATCGTCATCAAGAACCGTCCCTGCAAGGTGGTTGAGGTTTCAACTTCTAAGACCGGCAAGCACGGGCATGCTAAGTGTCACTTTGTGGGAATTGACATCTTCACTAACAAGAAGCTTGAAGATATCGTTCCATCATCCCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGACATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATTTGAGGCTCCCAACTGATGATAACCTGCTCACTCAGATTAAGGATGGATTTGCTGAAGGAAAGGACCTCGTCGTCTCGGTGATGTCTGCCATGGGAGAGGAACAAATCAACGCCCTGAAGGATATCGGGCCGAAGTAG | 480 | 48.96 | MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK | 159 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 24515985 | 24520219 | - | Sed0018573.1 | Sed13g1966 | 735476 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1966 | 159 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Sed13g1966 | 159 | FunFam | Eukaryotic translation initiation factor 5A | 86 | 158 | - | - | |
Sed13g1966 | 159 | NCBIfam | translation initiation factor IF-5A | 17 | 153 | IPR001884 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro) | |
Sed13g1966 | 159 | PIRSF | Transl_init_eIF5A | 1 | 157 | IPR001884 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro) | |
Sed13g1966 | 159 | SMART | eIF_5a_2 | 85 | 154 | IPR020189 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro) | |
Sed13g1966 | 159 | Pfam | Translation initiation factor 5A-like, N-terminal | 17 | 79 | IPR048670 | - | |
Sed13g1966 | 159 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
Sed13g1966 | 159 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 157 | IPR001884 | GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro) | |
Sed13g1966 | 159 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 154 | IPR020189 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro) | |
Sed13g1966 | 159 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Sed13g1966 | 159 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 156 | IPR012340 | - | |
Sed13g1966 | 159 | FunFam | Eukaryotic translation initiation factor 5A | 1 | 85 | - | - | |
Sed13g1966 | 159 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro) | |
Sed13g1966 | 159 | CDD | S1_eIF5A | 86 | 156 | - | - | |
Sed13g1966 | 159 | Gene3D | - | 86 | 158 | IPR012340 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g1496 | Sed-Chr6:39663908 | Sed13g1966 | Sed-Chr13:24515985 | 3.60E-81 | dispersed | |
Sed07g1964 | Sed-Chr7:34323498 | Sed13g1966 | Sed-Chr13:24515985 | 1.50E-79 | dispersed | |
Sed13g1966 | Sed-Chr13:24515985 | Sed05g1744 | Sed-Chr5:31291390 | 2.30E-88 | wgd | |
Sed13g1966 | Sed-Chr13:24515985 | Sed08g0584 | Sed-Chr8:3976391 | 5.80E-23 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1966 | K03263 | - | mtr:25490487 | 317.005 |