Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1968 ATGGCTTTGTTTCGCAAGTTCTTCTATCGGAAGCCGCCCGACGGGCTTTTGGAAATATCCGAAAGGGTTTATGTTTTCGACTGCTGCTTTACAAAGGAGGTTTTGGAAGAAGATGAATTCAAAGTCTATATTGGAGGCACCGTGAGACAACTTCGTGAGAGTCTCACTGACGCTTCATTCATGGTGTTCAATTTCCGAGAGGGGGAGAACCAAAGCCTGCTTACTTCAATATTAACCGAGTATGATATGACTGTTATGGACTATCCTCGACAATATGAAGGCTGTCCTCTGCTCACGATGGAAATGATCCACCATTTCTTAAGATCCAGTGAAAGCTGGCTCTCACTTGGGCAACAAAATGTACTTATGATGCACTGTGAACGAGGAGGGTGGCCAGTCTTGGCTTTCATGTTGGCCGCTCTTTTGATTTACAGGAAGCAGTATGCTGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCCCCTCGGGAGCTTTTGCAGTTGATGTCTCCTCTTAATCCATTGCCTTCACAATTGAGGTATCTTCAATATGTATCAAGAAGAAGTGTGGTATCACAATGGCCTCCCCTCGATAGGGCGCTTACTCTAGACTGCATAATTATTAGATATATTCCTAATATGGATGGGGAAGGTGGTTGCCGCCCAATATTTAGGATATATGGCCAGGATCCCTTTATGGTTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCTAAAAAGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGAATGTGAACTGGTTAAAATCGATATCAATTGCCATATCCAAGGCGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCAGGAAAGGGAGGAGATGATGTTTCGAGTTATGTTTAATACATCTTTTATAAGGTCAAATATTTTGATGCTTAACCGTGATGACATTGATATCTTATGGCATGCAAAGGATCAATTTCCAAAGGACTTCAGAGCAGAGGTTATTTTCTCAGAGATGGATGCTTCTGCACCGCTTATTTCAGTTGAATTGCCAAGTATTGAGGAGAAAGATGGTCTTCCCGTTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCGAAGGCAGACGCAGCTCTTAATATGCTTCAGAAAATCACAGCTTCAAATTTTCTTCAAGAAAAACTGGTTAGTTCCTGCTCTTTGGACAAAAACCAGTGGCTTGACTTATCTTTTGAAAAACTAATTTCAGAATTTGAGGCATCTGAAGACAACATTAGAAGTCCACGATTGATGACAGAAACAAATCAATCTCAACCTTCTGAACTATCTTGCGCTGCAAGTTCTAGATCAAAGATTGAACCCCCAGAATCACAGGTTGATCTCCAACTACCACCTCAATCTTCCTTGTCAACACCAGTCTCCTTCCGTAGTTATGGGCAAGGTTCACCTCGCCCTATGTTAAGATATCATAGTGCACCCTCAGCTCTTGGCATCACAGCTTTATTACATGATGATTCCGAATTTATTAGTAAAGAAGCCATACATCCGGCGACAATATCTTCGCCATCATCTGCTCGCTTGACTACGAGGGCTCTAGATTCACCTAAAGATATTCAACCTAGTAAGCTTTCTATTTTGCCTCTCCCACTGCCATTAGCGCCAAGTTCTACATTAGAAAATTCTTCTACCACTATGTCAACTTTAACCATTCCTGATCCATTGTCACTCCGCCAACTTTCTTTGAAACCTACCGAATCTTCAATTTCTCAACCGTCTCAAACCACGTCATTAGGGGGAAGTCAATTATCACCATCTTCGTTACAACCAACGCCTACCTCTTTTCCTGGGGAGTCATTCGGTGAGTGCTTACCTTCAATACCCCCTTCTTCTCCTTTATTGAGATCATCTCCATCTTCCTGTACTAAGGAATCATTTTTCACGCCAACTACTCCCCCTCCTCCTCTTGTCTCTCATCTTGATTCTCCTTCGTTAATAGTTATATCTCCATCTTCTAGTGGGACAAAGGGTTCAATTTCCCTGTCTACAGCCCTACTATTATCTTCTACAAAGACATCAACTCCAATTGTTTCACAACCTTCTTCATCTTATAACTGTCTAGTTTCTTCTCAGTCACCTAAACAGAATTCGATGAGTGTCCCTCCCCCTTTCCCTCCACTTCCTCTCCCTCCATGTTCTAGCCCTAACATGGGCACTGGTGCTGTCTATTCAACATTAGTGCTCCCACCCCCACCTCCACCTCCTTCACAGAAGGACTCTATTATCACAGTCATGCACGATCCCCTTCCCCCTCTACCTACAGCCCCACCCTTGCCCCCATCTTGTTTGACTCCAACATCTATTTGTGGATCTAGTATCACGTCTCCAGGGTTTCCGCCACCGCCACCTCCTCCTCCTAGTCTTGCACCACAAGATTCTACTGTGGTAGTTAGGAACTTGACGGTTGTACTTAGCCCTCCGCCTCCGCCTCCCCCACCTCCACCCTTACTTAATTGTTCCCTAGGTCCTAGTATTGTATCTTTAGAGCCACCACCGCCTCCTCCTCCTCCTAATCTTGCACCAAATGTTTCTGCAACAAGGCATGTCTCTTGCCCCCCTCCTCCTCCACCACCTTTTGCAAATTCTAGTCCAGGTGCTGTAACGTCAGCTCCACCTCCTCCTCCTCCTCCAGGTTTTTCAGTGCAGGGTTCTACAACACATGCGCCACCTGCACCCCCTCCTCCAGGTCTCAATGGTAATAAACTTTCAAATGGCAATGATACTTCTTCACAATCTCACGTTGGCATTAATAACAGCAACGTGCCTTCTATTCCTGGACCACCTTCCAGTGCTTTATTGAATGCTAAGGGACGAGGCCTTGGACGTTTGATCTCCAAAAACCTGTCTCAAACTAAAAAGTCAAATTTGAAGCCTTATCATTGGTTAAAACTAACAAGAGCCATGCAAGGAAGCTTATGGGCAGAAACTCAAAAGACTGATGATGCTTCCAAAGCTGCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTGCAGCTACACCAAATTCAAATGCTAGTGGTAGAAATTCAAATCGCGTAGCCTCTGGGCCGAAGTCAGATAAAGTTCATTTGATTGAACTTCGACGGTCCTATAACTGCGAAATTATGCTCTCTAAAGTTAAGATTCCTTTGCCTGATATGATGTCTTCAGTCCTTACATTGGATGATTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTAGTCCAACAAAAGAAGAAATGGAACAAATTAAGGGGTACACTGGGGACAAGGAAAGCCTGGGAAAATGCGAACAATTCTTCTCAGAATTGATGAAAGTCCCACGAGTGGAGTCCAAGCTAAGGGTTTTTTCTTTCAAGATACAGTTCCGTTTGCAGGTCTCTGAGCTTAGACATAATCTGAACATTATCAATTCGGCATCTGAAGAGATTAGAAATTCGATAAAGTTGAAAAGGGTAATGCAAACTATCCTCTCGTTGGGTAATGCTTTGAACCACGGAACGGCTAGAGGTTCTGCTATTGGCTTTCGGCTTGATAGTCTCCTCAAGCTCACTGATACGCGAGCCAGAAACAGTAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAACTGCCAGAACTTTTAGATTTTCCGAACGACCTTGTGAGTTTGGAAGGTTCTACAAAGATACAACTGAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGGCTAATTCAGAAAACGATGGACCCATTTCTGAAACTTTTTGCCGGACTTTAAAAGACTTTCTTTCTCATGCTGAGGCCGAAGTGAGATCTCTTGCCTCTCTTTATTCCAATGTGGGTAGAAATGCTGATGCACTGGCTCTTTATTTTGGCGAGGATCCAGCACGCTGCCCTTTTGAGCAAGTTGTTTCTACACTGTTAAATTTCGTGCGGATGTTTGTGAGATCGCACGTCGAAAACTGCAAGAAGCTTGATTTCGAAAGGAAGAAAGCACAGAAGGAAGCAGCAGAAGAGAAGTCAAAGGTCAGTACCCCAAAAAAGGGGTCGTGA 4140 43.55 MALFRKFFYRKPPDGLLEISERVYVFDCCFTKEVLEEDEFKVYIGGTVRQLRESLTDASFMVFNFREGENQSLLTSILTEYDMTVMDYPRQYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLMMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRSVVSQWPPLDRALTLDCIIIRYIPNMDGEGGCRPIFRIYGQDPFMVADRTSKVLFSTPKKSKLVRQYKQVECELVKIDINCHIQGDVVLECISLDNDQEREEMMFRVMFNTSFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVIFSEMDASAPLISVELPSIEEKDGLPVEAFARVQEIFSNVDWLSPKADAALNMLQKITASNFLQEKLVSSCSLDKNQWLDLSFEKLISEFEASEDNIRSPRLMTETNQSQPSELSCAASSRSKIEPPESQVDLQLPPQSSLSTPVSFRSYGQGSPRPMLRYHSAPSALGITALLHDDSEFISKEAIHPATISSPSSARLTTRALDSPKDIQPSKLSILPLPLPLAPSSTLENSSTTMSTLTIPDPLSLRQLSLKPTESSISQPSQTTSLGGSQLSPSSLQPTPTSFPGESFGECLPSIPPSSPLLRSSPSSCTKESFFTPTTPPPPLVSHLDSPSLIVISPSSSGTKGSISLSTALLLSSTKTSTPIVSQPSSSYNCLVSSQSPKQNSMSVPPPFPPLPLPPCSSPNMGTGAVYSTLVLPPPPPPPSQKDSIITVMHDPLPPLPTAPPLPPSCLTPTSICGSSITSPGFPPPPPPPPSLAPQDSTVVVRNLTVVLSPPPPPPPPPPLLNCSLGPSIVSLEPPPPPPPPNLAPNVSATRHVSCPPPPPPPFANSSPGAVTSAPPPPPPPGFSVQGSTTHAPPAPPPPGLNGNKLSNGNDTSSQSHVGINNSNVPSIPGPPSSALLNAKGRGLGRLISKNLSQTKKSNLKPYHWLKLTRAMQGSLWAETQKTDDASKAAEFDMSELESLFSAATPNSNASGRNSNRVASGPKSDKVHLIELRRSYNCEIMLSKVKIPLPDMMSSVLTLDDSALDVDQVENLIKFSPTKEEMEQIKGYTGDKESLGKCEQFFSELMKVPRVESKLRVFSFKIQFRLQVSELRHNLNIINSASEEIRNSIKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNSKMTLMHYLCKVLAEKLPELLDFPNDLVSLEGSTKIQLKYLAEEMQAISKGLEKVVQELANSENDGPISETFCRTLKDFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLLNFVRMFVRSHVENCKKLDFERKKAQKEAAEEKSKVSTPKKGS 1379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24532389 24551822 + Sed0004730.1 Sed13g1968 735478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1968 1379 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Sed13g1968 1379 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Sed13g1968 1379 ProSiteProfiles Formin homology-2 (FH2) domain profile. 970 1369 IPR015425 -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 1023 1041 - -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 799 814 - -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 773 787 - -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 587 620 - -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 851 865 - -
Sed13g1968 1379 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Sed13g1968 1379 Gene3D Formin, FH2 domain 989 1378 IPR042201 -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 637 651 - -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 923 951 - -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 432 482 - -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 1023 1043 - -
Sed13g1968 1379 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 851 957 - -
Sed13g1968 1379 Coils Coil 1351 1371 - -
Sed13g1968 1379 SMART it6_source 969 1379 IPR015425 -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 754 815 - -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 587 662 - -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 431 482 - -
Sed13g1968 1379 MobiDBLite consensus disorder prediction 872 904 - -
Sed13g1968 1379 Pfam Formin Homology 2 Domain 974 1343 IPR015425 -
Sed13g1968 1379 SUPERFAMILY Formin homology 2 domain (FH2 domain) 983 1363 - -
Sed13g1968 1379 Gene3D - 200 341 - -
Sed13g1968 1379 SMART PTEN_C2_2 197 337 IPR014020 -
Sed13g1968 1379 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Sed13g1968 1379 PANTHER FORMIN-J 1 1366 IPR051144 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0223 Sed-Chr5:1370090 Sed13g1968 Sed-Chr13:24532389 5.60E-254 dispersed
Sed05g1742 Sed-Chr5:31263875 Sed13g1968 Sed-Chr13:24532389 0.00E+00 dispersed
Sed05g1743 Sed-Chr5:31268078 Sed13g1968 Sed-Chr13:24532389 0.00E+00 dispersed
Sed12g1975 Sed-Chr12:30723772 Sed13g1968 Sed-Chr13:24532389 1.10E-207 dispersed
Sed12g1976 Sed-Chr12:30723772 Sed13g1968 Sed-Chr13:24532389 6.70E-194 dispersed
Sed12g2294 Sed-Chr12:33108590 Sed13g1968 Sed-Chr13:24532389 0.00E+00 dispersed
Sed13g1968 Sed-Chr13:24532389 Sed08g0241 Sed-Chr8:1371158 1.00E-248 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1968 K28090 - csv:101214019 1912.12