Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1979 ATGACGGTTGAGCCGGGAATCGACGACCCACATGACCAGTTTCCGGTGGGGCTGCGTGTTCTTGCTGTGGACGATGACCCCACTTGCCTTTTTCTCTTGGAGACTTTGCTTCATCGCTGCCGCTATCATGTCACTACAACAAGTCAGGCTGTTATGGCACTCAAGTTGTTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTCAAGCTGCTAGAGCTTGTGGGGTTGGAGATGGACCTTCCTGTGATTATGCTGTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTAGTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAACATGTAATCAGGAGAAAGAAATTTGATCCGAAAGATCCAAAGAGTTCTGGCAATCAGGACAAGCCTGATTCTGAGAATGTTGACGAAGCAGCAGATTCAAATGGGAAATTTAATAAAAAAAGAAAGGATCAGAACTACGACGAAGATGATGATGAAGACGATAACGGGCAAGATAATGATGACTCTTCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTTGAGCTGCATAGGAAGTTTGTAAATGCTGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAGGATTTTAGACTTGATGAACGTCGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTCAAGAGAATCAGCTGTGTTGCAAATCAGCAAGCTAACATGGCGACTGCAATGAGCAGTGCAGATCCTTCCTATTTGAGAATTGGTTCTCTTAGTGGAATTGGGAATTTCCATTCTTTTACTGGACCTCCACAGTTTACTAACACTTCTTATAGATCTATCCCAACTACCGGGATGCTCGGTCGATTGAATACTCCTGCTTGTATGGGTATACATGGCCTTTCATCCCCGGGAACAGTTCCACTCAGTAACTTGAACAATTCAAGCAATGATCAGTCTACATTTCATTCAATCATGCTTTCTGGAAACCGCAGCGGGAATATTTTCCGAGGAATGCCAGAGCCATCAGAATTTGATCGACTACGACATGTTAAGGACGGTATCCACATCGACAATCTCTCTCCTGCTTTTGATGAGAGAACTGTATTTCCAACCTCCATTGGTCTTCCAAATGCAAACATGTCTACCAGTAATGGGAATAATCCTCTTTTAGGATTAAGTAATGATCCCTTGGTTTCAAAAGTCCAGCATCATGAACTACATGGAGCTAGAAAATTTGGACATCAATCTCCCATTTCTGTAGTATCTTCGAACTTGGAAAGTTCATGCCCTGCACTAGATAATGTTAGATGCACCAGTGACAATTGGTCGAAAGCTGCTCATTCATCTCGGATTCACTTGAATACTATTCCATCTAGTAACCTTCCTAATATTGCTACTTCCTACCATACCCCCAGTGCATTGCATATAGGAAATTGTCTTTCTGATATATCTTCTATTGCTTCAATATCTCCTCAGTCTCACGATTCTCGAACCGATTCTCAAACTCAGGCAGCCACAACTAGAAGTAGATATGATCAAATTATCACAAACGTTCCTCTTCGAGATTGCATTGGTCATAAAGAGGATGCTTGTTATCACACGTCCGTGGCCTGTAGCTCATCAAATTCTTTGATACCAGTCAATGGTATTGCAGAGACGTTACCGAAGCATTTGGATAACCAGAACACGATCTTCTCGGGAAGCAAGGATTTTAACGTGATGACTAGTCAAGAAAATCTTCTTGATCATGCAATGGTGGAATATGATCAATTCAAGAAATCAGGTATGGAGACATCACTCATGTCGAAACAGGGGTACTTGTATGATCATCAGCAAAAGATGCAAGCTAGATATTCTTCAAGTAATTGCGGTTCCTTGGAAGATATAGCATGTGCAATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGATTTTGGATGCGATAACTATCCCATTGGAACGTGCATGTGA 2058 42.03 MTVEPGIDDPHDQFPVGLRVLAVDDDPTCLFLLETLLHRCRYHVTTTSQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDPKSSGNQDKPDSENVDEAADSNGKFNKKRKDQNYDEDDDEDDNGQDNDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKRILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMATAMSSADPSYLRIGSLSGIGNFHSFTGPPQFTNTSYRSIPTTGMLGRLNTPACMGIHGLSSPGTVPLSNLNNSSNDQSTFHSIMLSGNRSGNIFRGMPEPSEFDRLRHVKDGIHIDNLSPAFDERTVFPTSIGLPNANMSTSNGNNPLLGLSNDPLVSKVQHHELHGARKFGHQSPISVVSSNLESSCPALDNVRCTSDNWSKAAHSSRIHLNTIPSSNLPNIATSYHTPSALHIGNCLSDISSIASISPQSHDSRTDSQTQAATTRSRYDQIITNVPLRDCIGHKEDACYHTSVACSSSNSLIPVNGIAETLPKHLDNQNTIFSGSKDFNVMTSQENLLDHAMVEYDQFKKSGMETSLMSKQGYLYDHQQKMQARYSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDNYPIGTCM 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24680189 24685606 - Sed0017390.1 Sed13g1979 735489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1979 685 MobiDBLite consensus disorder prediction 139 177 - -
Sed13g1979 685 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Sed13g1979 685 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
Sed13g1979 685 Gene3D - 18 198 - -
Sed13g1979 685 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Sed13g1979 685 FunFam Two-component response regulator 194 257 - -
Sed13g1979 685 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 346 IPR045279 GO:0009736(InterPro)
Sed13g1979 685 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Sed13g1979 685 MobiDBLite consensus disorder prediction 139 198 - -
Sed13g1979 685 CDD REC_typeB_ARR-like 20 134 - -
Sed13g1979 685 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Sed13g1979 685 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Sed13g1979 685 SUPERFAMILY CheY-like 17 139 IPR011006 -
Sed13g1979 685 PIRSF RR_ARR_type-B 1 685 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Sed13g1979 685 Gene3D - 199 257 - -
Sed13g1979 685 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2131 Sed-Chr4:35504384 Sed13g1979 Sed-Chr13:24680189 1.70E-37 dispersed
Sed05g0943 Sed-Chr5:7665903 Sed13g1979 Sed-Chr13:24680189 1.30E-16 dispersed
Sed12g2304 Sed-Chr12:33214239 Sed13g1979 Sed-Chr13:24680189 2.60E-128 dispersed
Sed13g1979 Sed-Chr13:24680189 Sed13g1981 Sed-Chr13:24680189 0.00E+00 dispersed
Sed13g1979 Sed-Chr13:24680189 Sed13g1980 Sed-Chr13:24680189 0.00E+00 tandem
Sed13g1979 Sed-Chr13:24680189 Sed05g1730 Sed-Chr5:31101267 0.00E+00 wgd
Sed13g1979 Sed-Chr13:24680189 Sed08g0600 Sed-Chr8:4143160 3.90E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40482 PF00072 Response_reg 2.90E-23 CL0304 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1979 K14491 - csv:101215220 1129.78