Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1980 | ATGACGGTTGAGCCGGGAATCGACGACCCACATGACCAGTTTCCGGTGGGGCTGCGTGTTCTTGCTGTGGACGATGACCCCACTTGCCTTTTTCTCTTGGAGACTTTGCTTCATCGCTGCCGCTATCATGTCACTACAACAAGTCAGGCTGTTATGGCACTCAAGTTGTTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTCAAGCTGCTAGAGCTTGTGGGGTTGGAGATGGACCTTCCTGTGATTATGCTGTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTAGTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAACATGTAATCAGGAGAAAGAAATTTGATCCGAAAGATCCAAAGAGTTCTGGCAATCAGGACAAGCCTGATTCTGAGAATGTTGACGAAGCAGCAGATTCAAATGGGAAATTTAATAAAAAAAGAAAGGATCAGAACTACGACGAAGATGATGATGAAGACGATAACGGGCAAGATAATGATGACTCTTCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTTGAGCTGCATAGGAAGTTTGTAAATGCTGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAGGATTTTAGACTTGATGAACGTCGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTCAAGAGAATCAGCTGTGTTGCAAATCAGCAAGCTAACATGGCGACTGCAATGAGCAGTGCAGATCCTTCCTATTTGAGAATTGGTTCTCTTAGTGGAATTGGGAATTTCCATTCTTTTACTGGACCTCCACAGTTTACTAACACTTCTTATAGATCTATCCCAACTACCGGGATGCTCGGTCGATTGAATACTCCTGCTTGTATGGGTATACATGGCCTTTCATCCCCGGGAACAGTTCCACTCAGTAACTTGAACAATTCAAGCAATGATCAGTCTACATTTCATTCAATCATGCTTTCTGGAAACCGCAGCGGGAATATTTTCCGAGGAATGCCAGAGCCATCAGAATTTGATCGACTACGACATGTTAAGGACGGTATCCACATCGACAATCTCTCTCCTGCTTTTGATGAGAGAACTGTATTTCCAACCTCCATTGGTCTTCCAAATGCAAACATGTCTACCAGTAATGGGAATAATCCTCTTTTAGGATTAAGTAATGATCCCTTGGTTTCAAAAGTCCAGCATCATGAACTACATGGAGCTAGAAAATTTGGACATCAATCTCCCATTTCTGTAGTATCTTCGAACTTGGAAAGTTCATGCCCTGCACTAGATAATGTTAGATGCACCAGTGACAATTGGTCGAAAGCTGCTCATTCATCTCGGATTCACTTGAATACTATTCCATCTAGTAACCTTCCTAATATTGCTACTTCCTACCATACCCCCAGTGCATTGCATATAGGAAATTGTCTTTCTGATATATCTTCTATTGCTTCAATATCTCCTCAGTCTCACGATTCTCGAACCGATTCTCAAACTCAGGCAGCCACAACTAGAAGTAGATATGATCAAATTATCACAAACGTTCCTCTTCGAGATTGCATTGGTCATAAAGAGGATGCTTGTTATCACACGTCCGTGGCCTGTAGCTCATCAAATTCTTTGATACCAGTCAATGGTATTGCAGAGACGTTACCGAAGCATTTGGATAACCAGAACACGATCTTCTCGGGAAGCAAGGATTTTAACGTGATGACTAGTCAAGAAAATCTTCTTGATCATGCAATGGTGGAATATGATCAATTCAAGAAATCAGGTATGGAGACATCACTCATGTCGAAACAGGGGTACTTGTATGATCATCAGCAAAAGATGCAAGCTAGATATTCTTCAAGTAATTGCGGTTCCTTGGAAGATATAGCATGTGCAATGATGAAACAGGTAACAAATTTTCGACTTTTTTTTGGATAA | 2016 | 41.87 | MTVEPGIDDPHDQFPVGLRVLAVDDDPTCLFLLETLLHRCRYHVTTTSQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDPKSSGNQDKPDSENVDEAADSNGKFNKKRKDQNYDEDDDEDDNGQDNDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKRILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMATAMSSADPSYLRIGSLSGIGNFHSFTGPPQFTNTSYRSIPTTGMLGRLNTPACMGIHGLSSPGTVPLSNLNNSSNDQSTFHSIMLSGNRSGNIFRGMPEPSEFDRLRHVKDGIHIDNLSPAFDERTVFPTSIGLPNANMSTSNGNNPLLGLSNDPLVSKVQHHELHGARKFGHQSPISVVSSNLESSCPALDNVRCTSDNWSKAAHSSRIHLNTIPSSNLPNIATSYHTPSALHIGNCLSDISSIASISPQSHDSRTDSQTQAATTRSRYDQIITNVPLRDCIGHKEDACYHTSVACSSSNSLIPVNGIAETLPKHLDNQNTIFSGSKDFNVMTSQENLLDHAMVEYDQFKKSGMETSLMSKQGYLYDHQQKMQARYSSSNCGSLEDIACAMMKQVTNFRLFFG | 671 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 24680189 | 24685606 | - | Sed0017390.2 | Sed13g1980 | 735490 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1980 | 671 | MobiDBLite | consensus disorder prediction | 139 | 177 | - | - | |
Sed13g1980 | 671 | SMART | REC_2 | 18 | 130 | IPR001789 | GO:0000160(InterPro) | |
Sed13g1980 | 671 | SUPERFAMILY | CheY-like | 17 | 139 | IPR011006 | - | |
Sed13g1980 | 671 | SUPERFAMILY | Homeodomain-like | 195 | 255 | IPR009057 | - | |
Sed13g1980 | 671 | ProSiteProfiles | Response regulatory domain profile. | 19 | 134 | IPR001789 | GO:0000160(InterPro) | |
Sed13g1980 | 671 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 15 | 336 | IPR045279 | GO:0009736(InterPro) | |
Sed13g1980 | 671 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 198 | 251 | IPR006447 | GO:0003677(InterPro) | |
Sed13g1980 | 671 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 195 | 254 | IPR017930 | - | |
Sed13g1980 | 671 | MobiDBLite | consensus disorder prediction | 139 | 198 | - | - | |
Sed13g1980 | 671 | FunFam | Two-component response regulator | 194 | 257 | - | - | |
Sed13g1980 | 671 | Gene3D | - | 199 | 257 | - | - | |
Sed13g1980 | 671 | CDD | REC_typeB_ARR-like | 20 | 134 | - | - | |
Sed13g1980 | 671 | PIRSF | RR_ARR_type-B | 1 | 666 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Sed13g1980 | 671 | Pfam | Myb-like DNA-binding domain | 200 | 250 | IPR001005 | - | |
Sed13g1980 | 671 | Gene3D | - | 18 | 198 | - | - | |
Sed13g1980 | 671 | Pfam | Response regulator receiver domain | 20 | 128 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1730 | Sed-Chr5:31101267 | Sed13g1980 | Sed-Chr13:24680189 | 9.50E-304 | dispersed | |
Sed12g2305 | Sed-Chr12:33214939 | Sed13g1980 | Sed-Chr13:24680189 | 1.60E-122 | dispersed | |
Sed13g1980 | Sed-Chr13:24680189 | Sed14g0045 | Sed-Chr14:564554 | 2.60E-19 | dispersed | |
Sed13g1979 | Sed-Chr13:24680189 | Sed13g1980 | Sed-Chr13:24680189 | 0.00E+00 | tandem | |
Sed13g1980 | Sed-Chr13:24680189 | Sed13g1981 | Sed-Chr13:24680189 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40483 | PF00072 | Response_reg | 2.80E-23 | CL0304 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1980 | K14491 | - | csv:101215220 | 1079.7 |