Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1980 ATGACGGTTGAGCCGGGAATCGACGACCCACATGACCAGTTTCCGGTGGGGCTGCGTGTTCTTGCTGTGGACGATGACCCCACTTGCCTTTTTCTCTTGGAGACTTTGCTTCATCGCTGCCGCTATCATGTCACTACAACAAGTCAGGCTGTTATGGCACTCAAGTTGTTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTCAAGCTGCTAGAGCTTGTGGGGTTGGAGATGGACCTTCCTGTGATTATGCTGTCTGCAAATGGAGATCCCAAACTTGTGATGAAAGGAATTAGTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAACATGTAATCAGGAGAAAGAAATTTGATCCGAAAGATCCAAAGAGTTCTGGCAATCAGGACAAGCCTGATTCTGAGAATGTTGACGAAGCAGCAGATTCAAATGGGAAATTTAATAAAAAAAGAAAGGATCAGAACTACGACGAAGATGATGATGAAGACGATAACGGGCAAGATAATGATGACTCTTCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTTGAGCTGCATAGGAAGTTTGTAAATGCTGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAGGATTTTAGACTTGATGAACGTCGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTCAAGAGAATCAGCTGTGTTGCAAATCAGCAAGCTAACATGGCGACTGCAATGAGCAGTGCAGATCCTTCCTATTTGAGAATTGGTTCTCTTAGTGGAATTGGGAATTTCCATTCTTTTACTGGACCTCCACAGTTTACTAACACTTCTTATAGATCTATCCCAACTACCGGGATGCTCGGTCGATTGAATACTCCTGCTTGTATGGGTATACATGGCCTTTCATCCCCGGGAACAGTTCCACTCAGTAACTTGAACAATTCAAGCAATGATCAGTCTACATTTCATTCAATCATGCTTTCTGGAAACCGCAGCGGGAATATTTTCCGAGGAATGCCAGAGCCATCAGAATTTGATCGACTACGACATGTTAAGGACGGTATCCACATCGACAATCTCTCTCCTGCTTTTGATGAGAGAACTGTATTTCCAACCTCCATTGGTCTTCCAAATGCAAACATGTCTACCAGTAATGGGAATAATCCTCTTTTAGGATTAAGTAATGATCCCTTGGTTTCAAAAGTCCAGCATCATGAACTACATGGAGCTAGAAAATTTGGACATCAATCTCCCATTTCTGTAGTATCTTCGAACTTGGAAAGTTCATGCCCTGCACTAGATAATGTTAGATGCACCAGTGACAATTGGTCGAAAGCTGCTCATTCATCTCGGATTCACTTGAATACTATTCCATCTAGTAACCTTCCTAATATTGCTACTTCCTACCATACCCCCAGTGCATTGCATATAGGAAATTGTCTTTCTGATATATCTTCTATTGCTTCAATATCTCCTCAGTCTCACGATTCTCGAACCGATTCTCAAACTCAGGCAGCCACAACTAGAAGTAGATATGATCAAATTATCACAAACGTTCCTCTTCGAGATTGCATTGGTCATAAAGAGGATGCTTGTTATCACACGTCCGTGGCCTGTAGCTCATCAAATTCTTTGATACCAGTCAATGGTATTGCAGAGACGTTACCGAAGCATTTGGATAACCAGAACACGATCTTCTCGGGAAGCAAGGATTTTAACGTGATGACTAGTCAAGAAAATCTTCTTGATCATGCAATGGTGGAATATGATCAATTCAAGAAATCAGGTATGGAGACATCACTCATGTCGAAACAGGGGTACTTGTATGATCATCAGCAAAAGATGCAAGCTAGATATTCTTCAAGTAATTGCGGTTCCTTGGAAGATATAGCATGTGCAATGATGAAACAGGTAACAAATTTTCGACTTTTTTTTGGATAA 2016 41.87 MTVEPGIDDPHDQFPVGLRVLAVDDDPTCLFLLETLLHRCRYHVTTTSQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDPKSSGNQDKPDSENVDEAADSNGKFNKKRKDQNYDEDDDEDDNGQDNDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKRILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMATAMSSADPSYLRIGSLSGIGNFHSFTGPPQFTNTSYRSIPTTGMLGRLNTPACMGIHGLSSPGTVPLSNLNNSSNDQSTFHSIMLSGNRSGNIFRGMPEPSEFDRLRHVKDGIHIDNLSPAFDERTVFPTSIGLPNANMSTSNGNNPLLGLSNDPLVSKVQHHELHGARKFGHQSPISVVSSNLESSCPALDNVRCTSDNWSKAAHSSRIHLNTIPSSNLPNIATSYHTPSALHIGNCLSDISSIASISPQSHDSRTDSQTQAATTRSRYDQIITNVPLRDCIGHKEDACYHTSVACSSSNSLIPVNGIAETLPKHLDNQNTIFSGSKDFNVMTSQENLLDHAMVEYDQFKKSGMETSLMSKQGYLYDHQQKMQARYSSSNCGSLEDIACAMMKQVTNFRLFFG 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24680189 24685606 - Sed0017390.2 Sed13g1980 735490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1980 671 MobiDBLite consensus disorder prediction 139 177 - -
Sed13g1980 671 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Sed13g1980 671 SUPERFAMILY CheY-like 17 139 IPR011006 -
Sed13g1980 671 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Sed13g1980 671 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Sed13g1980 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 336 IPR045279 GO:0009736(InterPro)
Sed13g1980 671 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
Sed13g1980 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Sed13g1980 671 MobiDBLite consensus disorder prediction 139 198 - -
Sed13g1980 671 FunFam Two-component response regulator 194 257 - -
Sed13g1980 671 Gene3D - 199 257 - -
Sed13g1980 671 CDD REC_typeB_ARR-like 20 134 - -
Sed13g1980 671 PIRSF RR_ARR_type-B 1 666 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Sed13g1980 671 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Sed13g1980 671 Gene3D - 18 198 - -
Sed13g1980 671 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1730 Sed-Chr5:31101267 Sed13g1980 Sed-Chr13:24680189 9.50E-304 dispersed
Sed12g2305 Sed-Chr12:33214939 Sed13g1980 Sed-Chr13:24680189 1.60E-122 dispersed
Sed13g1980 Sed-Chr13:24680189 Sed14g0045 Sed-Chr14:564554 2.60E-19 dispersed
Sed13g1979 Sed-Chr13:24680189 Sed13g1980 Sed-Chr13:24680189 0.00E+00 tandem
Sed13g1980 Sed-Chr13:24680189 Sed13g1981 Sed-Chr13:24680189 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40483 PF00072 Response_reg 2.80E-23 CL0304 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1980 K14491 - csv:101215220 1079.7