Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1981 ATGAAAGGAATTAGTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATTGAGGAGCTAAAGAACATTTGGCAACATGTAATCAGGAGAAAGAAATTTGATCCGAAAGATCCAAAGAGTTCTGGCAATCAGGACAAGCCTGATTCTGAGAATGTTGACGAAGCAGCAGATTCAAATGGGAAATTTAATAAAAAAAGAAAGGATCAGAACTACGACGAAGATGATGATGAAGACGATAACGGGCAAGATAATGATGACTCTTCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCCGTTGAGCTGCATAGGAAGTTTGTAAATGCTGTTAACCAGTTGGGCATAGACAAGGCAGTGCCTAAAAGGATTTTAGACTTGATGAACGTCGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTCAAGAGAATCAGCTGTGTTGCAAATCAGCAAGCTAACATGGCGACTGCAATGAGCAGTGCAGATCCTTCCTATTTGAGAATTGGTTCTCTTAGTGGAATTGGGAATTTCCATTCTTTTACTGGACCTCCACAGTTTACTAACACTTCTTATAGATCTATCCCAACTACCGGGATGCTCGGTCGATTGAATACTCCTGCTTGTATGGGTATACATGGCCTTTCATCCCCGGGAACAGTTCCACTCAGTAACTTGAACAATTCAAGCAATGATCAGTCTACATTTCATTCAATCATGCTTTCTGGAAACCGCAGCGGGAATATTTTCCGAGGAATGCCAGAGCCATCAGAATTTGATCGACTACGACATGTTAAGGACGGTATCCACATCGACAATCTCTCTCCTGCTTTTGATGAGAGAACTGTATTTCCAACCTCCATTGGTCTTCCAAATGCAAACATGTCTACCAGTAATGGGAATAATCCTCTTTTAGGATTAAGTAATGATCCCTTGGTTTCAAAAGTCCAGCATCATGAACTACATGGAGCTAGAAAATTTGGACATCAATCTCCCATTTCTGTAGTATCTTCGAACTTGGAAAGTTCATGCCCTGCACTAGATAATGTTAGATGCACCAGTGACAATTGGTCGAAAGCTGCTCATTCATCTCGGATTCACTTGAATACTATTCCATCTAGTAACCTTCCTAATATTGCTACTTCCTACCATACCCCCAGTGCATTGCATATAGGAAATTGTCTTTCTGATATATCTTCTATTGCTTCAATATCTCCTCAGTCTCACGATTCTCGAACCGATTCTCAAACTCAGGCAGCCACAACTAGAAGTAGATATGATCAAATTATCACAAACGTTCCTCTTCGAGATTGCATTGGTCATAAAGAGGATGCTTGTTATCACACGTCCGTGGCCTGTAGCTCATCAAATTCTTTGATACCAGTCAATGGTATTGCAGAGACGTTACCGAAGCATTTGGATAACCAGAACACGATCTTCTCGGGAAGCAAGGATTTTAACGTGATGACTAGTCAAGAAAATCTTCTTGATCATGCAATGGTGGAATATGATCAATTCAAGAAATCAGGTATGGAGACATCACTCATGTCGAAACAGGGGTACTTGTATGATCATCAGCAAAAGATGCAAGCTAGATATTCTTCAAGTAATTGCGGTTCCTTGGAAGATATAGCATGTGCAATGATGAAACAGGAACAAGATGATGGAAAATTATTGGAAGGAGATTTTGGATGCGATAACTATCCCATTGGAACGTGCATGTGA 1743 40.73 MKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDPKSSGNQDKPDSENVDEAADSNGKFNKKRKDQNYDEDDDEDDNGQDNDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKRILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMATAMSSADPSYLRIGSLSGIGNFHSFTGPPQFTNTSYRSIPTTGMLGRLNTPACMGIHGLSSPGTVPLSNLNNSSNDQSTFHSIMLSGNRSGNIFRGMPEPSEFDRLRHVKDGIHIDNLSPAFDERTVFPTSIGLPNANMSTSNGNNPLLGLSNDPLVSKVQHHELHGARKFGHQSPISVVSSNLESSCPALDNVRCTSDNWSKAAHSSRIHLNTIPSSNLPNIATSYHTPSALHIGNCLSDISSIASISPQSHDSRTDSQTQAATTRSRYDQIITNVPLRDCIGHKEDACYHTSVACSSSNSLIPVNGIAETLPKHLDNQNTIFSGSKDFNVMTSQENLLDHAMVEYDQFKKSGMETSLMSKQGYLYDHQQKMQARYSSSNCGSLEDIACAMMKQEQDDGKLLEGDFGCDNYPIGTCM 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24680189 24683326 - Sed0017390.3 Sed13g1981 735491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1981 580 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 149 IPR017930 -
Sed13g1981 580 MobiDBLite consensus disorder prediction 29 93 - -
Sed13g1981 580 SUPERFAMILY Homeodomain-like 90 150 IPR009057 -
Sed13g1981 580 NCBIfam myb-like DNA-binding domain, SHAQKYF class 93 146 IPR006447 GO:0003677(InterPro)
Sed13g1981 580 ProSiteProfiles Response regulatory domain profile. 1 29 IPR001789 GO:0000160(InterPro)
Sed13g1981 580 Pfam Myb-like DNA-binding domain 95 145 IPR001005 -
Sed13g1981 580 FunFam Two-component response regulator 89 152 - -
Sed13g1981 580 SUPERFAMILY CheY-like 2 34 IPR011006 -
Sed13g1981 580 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 16 319 IPR044841 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed13g1981 580 MobiDBLite consensus disorder prediction 29 72 - -
Sed13g1981 580 Gene3D - 89 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g1979 Sed-Chr13:24680189 Sed13g1981 Sed-Chr13:24680189 0.00E+00 dispersed
Sed13g1981 Sed-Chr13:24680189 Sed14g0045 Sed-Chr14:564554 2.20E-19 dispersed
Sed13g1980 Sed-Chr13:24680189 Sed13g1981 Sed-Chr13:24680189 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40484 PF00249 Myb_DNA-binding 8.50E-07 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1981 K14491 - csv:101215220 941.799