Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1994 ATGGCGTATCACAATCACCTCTCTCAGGACCTTCCTCTCCACTTTTCCGACCATCAACACCAGAATCAGTCTTCCATTTTGCCGGACCAGCTCGCCGGCGGCCACTCCTCGCCGGCGGACCCCAAGTCCCACCACCACCACCACCACCACCACCCGCTGCAGACGGCGGCGCCCAATTGGCTCAACAACGCACTGCTTCGCAACCAAAACCCCCATTCTCACTTCCCTACCGACACCGCCGCACCGCCGCCGAACAACGTCAATACTGATTTCCTCAACCTCCACACCACGGCGGCCGATTCCGCCGCCGTCTCTCACTCCTCCAACCAATGGCTCTCCCGCCCGATTCTCCACCGTAACCACAGCGATGTAATCGACGGTGTCGGCGCCGCTGCCGGCGACGCTATGATTGGTGCCGTCTCTCACGATTCCGTCGATTTGAAGAACGATGCTATTAGCGGCGACGGATTGAATAAGAGCGAGGGTATGGTTATGGAACCTGGCGGCGGAGGCGGCGGTGGAGAGGGGATTTTAAATTGGCAACATGCTCGCTCTAAAGCGGAAATTCTCACTCATCCGCTTTATGAACAGCTTCTCTCCGCTCATGTCGCTTGCCTTCGCATCGCGACGCCGGTCGATCAATTGCCGAGAATCGATGCGCAGCTCGCTCAGTCTCAGAATGTCGTCGCTAAGTACTCAGCCTTGGGCCATAGCGCTCCGGCCATGGCCGGCGACGACAAAGAGCTCGATCAGTTCATGACACATTATGTTCTTCTGCTTTGTTCATTCAAAGAGCAACTCCAACAACATGTTCGGGTCCATGCCATGGAAGCAGTAATGGCTTGTTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGCGTTTCACCCGGTGAAGGTACGGGAGCGACGATGTCGGACGACGACGACGACCAGGTTGACAATGATGCAAATTTGTTTGATGGGAGTTTAGAGGGTTCAGACACCATGGGATTTGGCCCTCTTATTCCTACAGAGAGTGAGAGGTCCTTAATGGAAAGGGTCAGGCAAGAACTGAAGCATGAACTAAAAACGGGTTATAAGGAGAAAATTGTGGATATAAGAGAGGAAATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGTGATACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAATGGCCTTATCCTACTGAGGAAGACAAGACAAGGTTAGTGCAAGAAACTGGTCTGCAACTGAAACAGATAAACAATTGGTTCATCAACCAGAGGAAGCGAAACTGGCACAGCAATCCCTCCAGTTCTACAAACTTGAAAAGCAAACGCAAAAGTAATGCAGGTGAAAACAGCAGTGACCGTTTCAAATGA 1380 52.32 MAYHNHLSQDLPLHFSDHQHQNQSSILPDQLAGGHSSPADPKSHHHHHHHHPLQTAAPNWLNNALLRNQNPHSHFPTDTAAPPPNNVNTDFLNLHTTAADSAAVSHSSNQWLSRPILHRNHSDVIDGVGAAAGDAMIGAVSHDSVDLKNDAISGDGLNKSEGMVMEPGGGGGGGEGILNWQHARSKAEILTHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPAMAGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDNDANLFDGSLEGSDTMGFGPLIPTESERSLMERVRQELKHELKTGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKTRLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKSNAGENSSDRFK 459
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 24792996 24798277 + Sed0019443.1 Sed13g1994 735504
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1994 459 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 158 441 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed13g1994 459 MobiDBLite consensus disorder prediction 17 54 - -
Sed13g1994 459 Pfam KNOX2 domain 244 293 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed13g1994 459 Pfam Homeobox KN domain 391 430 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed13g1994 459 MobiDBLite consensus disorder prediction 428 459 - -
Sed13g1994 459 Pfam KNOX1 domain 186 226 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed13g1994 459 SUPERFAMILY Homeodomain-like 373 437 IPR009057 -
Sed13g1994 459 SMART KNOX2_2 239 294 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed13g1994 459 Gene3D - 372 433 - -
Sed13g1994 459 MobiDBLite consensus disorder prediction 293 313 - -
Sed13g1994 459 MobiDBLite consensus disorder prediction 17 31 - -
Sed13g1994 459 MobiDBLite consensus disorder prediction 67 87 - -
Sed13g1994 459 ProSiteProfiles 'Homeobox' domain profile. 371 434 IPR001356 GO:0003677(InterPro)
Sed13g1994 459 SMART ELK_2 351 372 IPR005539 GO:0003677(InterPro)
Sed13g1994 459 SMART HOX_1 373 438 IPR001356 GO:0003677(InterPro)
Sed13g1994 459 ProSiteProfiles ELK domain profile. 351 371 IPR005539 GO:0003677(InterPro)
Sed13g1994 459 Pfam ELK domain 351 372 IPR005539 GO:0003677(InterPro)
Sed13g1994 459 CDD homeodomain 374 435 IPR001356 GO:0003677(InterPro)
Sed13g1994 459 MobiDBLite consensus disorder prediction 428 448 - -
Sed13g1994 459 SMART KNOX1_2 183 227 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed13g1994 459 FunFam homeobox protein knotted-1-like 3 isoform X1 372 433 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3929 Sed-Chr1:68451195 Sed13g1994 Sed-Chr13:24792996 5.10E-102 dispersed
Sed05g0847 Sed-Chr5:6729889 Sed13g1994 Sed-Chr13:24792996 7.60E-106 dispersed
Sed05g0848 Sed-Chr5:6729889 Sed13g1994 Sed-Chr13:24792996 1.00E-59 dispersed
Sed05g1720 Sed-Chr5:30987398 Sed13g1994 Sed-Chr13:24792996 2.00E-184 dispersed
Sed05g1721 Sed-Chr5:30987398 Sed13g1994 Sed-Chr13:24792996 2.00E-184 dispersed
Sed11g1161 Sed-Chr11:27543477 Sed13g1994 Sed-Chr13:24792996 8.70E-170 dispersed
Sed11g1162 Sed-Chr11:27543477 Sed13g1994 Sed-Chr13:24792996 1.20E-169 dispersed
Sed13g1994 Sed-Chr13:24792996 Sed14g1325 Sed-Chr14:22133290 1.10E-29 dispersed
Sed11g1159 Sed-Chr11:27543477 Sed13g1994 Sed-Chr13:24792996 3.30E-172 wgd
Sed13g1994 Sed-Chr13:24792996 Sed03g1630 Sed-Chr3:10375075 8.60E-160 wgd
Sed13g1994 Sed-Chr13:24792996 Sed05g1718 Sed-Chr5:30987398 3.40E-188 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40486 PF03791 KNOX2 3.30E-21 No_clan Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1994 - - - 0.0