Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g1994 | ATGGCGTATCACAATCACCTCTCTCAGGACCTTCCTCTCCACTTTTCCGACCATCAACACCAGAATCAGTCTTCCATTTTGCCGGACCAGCTCGCCGGCGGCCACTCCTCGCCGGCGGACCCCAAGTCCCACCACCACCACCACCACCACCACCCGCTGCAGACGGCGGCGCCCAATTGGCTCAACAACGCACTGCTTCGCAACCAAAACCCCCATTCTCACTTCCCTACCGACACCGCCGCACCGCCGCCGAACAACGTCAATACTGATTTCCTCAACCTCCACACCACGGCGGCCGATTCCGCCGCCGTCTCTCACTCCTCCAACCAATGGCTCTCCCGCCCGATTCTCCACCGTAACCACAGCGATGTAATCGACGGTGTCGGCGCCGCTGCCGGCGACGCTATGATTGGTGCCGTCTCTCACGATTCCGTCGATTTGAAGAACGATGCTATTAGCGGCGACGGATTGAATAAGAGCGAGGGTATGGTTATGGAACCTGGCGGCGGAGGCGGCGGTGGAGAGGGGATTTTAAATTGGCAACATGCTCGCTCTAAAGCGGAAATTCTCACTCATCCGCTTTATGAACAGCTTCTCTCCGCTCATGTCGCTTGCCTTCGCATCGCGACGCCGGTCGATCAATTGCCGAGAATCGATGCGCAGCTCGCTCAGTCTCAGAATGTCGTCGCTAAGTACTCAGCCTTGGGCCATAGCGCTCCGGCCATGGCCGGCGACGACAAAGAGCTCGATCAGTTCATGACACATTATGTTCTTCTGCTTTGTTCATTCAAAGAGCAACTCCAACAACATGTTCGGGTCCATGCCATGGAAGCAGTAATGGCTTGTTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGCGTTTCACCCGGTGAAGGTACGGGAGCGACGATGTCGGACGACGACGACGACCAGGTTGACAATGATGCAAATTTGTTTGATGGGAGTTTAGAGGGTTCAGACACCATGGGATTTGGCCCTCTTATTCCTACAGAGAGTGAGAGGTCCTTAATGGAAAGGGTCAGGCAAGAACTGAAGCATGAACTAAAAACGGGTTATAAGGAGAAAATTGTGGATATAAGAGAGGAAATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGTGATACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAATGGCCTTATCCTACTGAGGAAGACAAGACAAGGTTAGTGCAAGAAACTGGTCTGCAACTGAAACAGATAAACAATTGGTTCATCAACCAGAGGAAGCGAAACTGGCACAGCAATCCCTCCAGTTCTACAAACTTGAAAAGCAAACGCAAAAGTAATGCAGGTGAAAACAGCAGTGACCGTTTCAAATGA | 1380 | 52.32 | MAYHNHLSQDLPLHFSDHQHQNQSSILPDQLAGGHSSPADPKSHHHHHHHHPLQTAAPNWLNNALLRNQNPHSHFPTDTAAPPPNNVNTDFLNLHTTAADSAAVSHSSNQWLSRPILHRNHSDVIDGVGAAAGDAMIGAVSHDSVDLKNDAISGDGLNKSEGMVMEPGGGGGGGEGILNWQHARSKAEILTHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHSAPAMAGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDNDANLFDGSLEGSDTMGFGPLIPTESERSLMERVRQELKHELKTGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKTRLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKSNAGENSSDRFK | 459 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 24792996 | 24798277 | + | Sed0019443.1 | Sed13g1994 | 735504 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g1994 | 459 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 158 | 441 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed13g1994 | 459 | MobiDBLite | consensus disorder prediction | 17 | 54 | - | - | |
Sed13g1994 | 459 | Pfam | KNOX2 domain | 244 | 293 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed13g1994 | 459 | Pfam | Homeobox KN domain | 391 | 430 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed13g1994 | 459 | MobiDBLite | consensus disorder prediction | 428 | 459 | - | - | |
Sed13g1994 | 459 | Pfam | KNOX1 domain | 186 | 226 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed13g1994 | 459 | SUPERFAMILY | Homeodomain-like | 373 | 437 | IPR009057 | - | |
Sed13g1994 | 459 | SMART | KNOX2_2 | 239 | 294 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed13g1994 | 459 | Gene3D | - | 372 | 433 | - | - | |
Sed13g1994 | 459 | MobiDBLite | consensus disorder prediction | 293 | 313 | - | - | |
Sed13g1994 | 459 | MobiDBLite | consensus disorder prediction | 17 | 31 | - | - | |
Sed13g1994 | 459 | MobiDBLite | consensus disorder prediction | 67 | 87 | - | - | |
Sed13g1994 | 459 | ProSiteProfiles | 'Homeobox' domain profile. | 371 | 434 | IPR001356 | GO:0003677(InterPro) | |
Sed13g1994 | 459 | SMART | ELK_2 | 351 | 372 | IPR005539 | GO:0003677(InterPro) | |
Sed13g1994 | 459 | SMART | HOX_1 | 373 | 438 | IPR001356 | GO:0003677(InterPro) | |
Sed13g1994 | 459 | ProSiteProfiles | ELK domain profile. | 351 | 371 | IPR005539 | GO:0003677(InterPro) | |
Sed13g1994 | 459 | Pfam | ELK domain | 351 | 372 | IPR005539 | GO:0003677(InterPro) | |
Sed13g1994 | 459 | CDD | homeodomain | 374 | 435 | IPR001356 | GO:0003677(InterPro) | |
Sed13g1994 | 459 | MobiDBLite | consensus disorder prediction | 428 | 448 | - | - | |
Sed13g1994 | 459 | SMART | KNOX1_2 | 183 | 227 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Sed13g1994 | 459 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 372 | 433 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3929 | Sed-Chr1:68451195 | Sed13g1994 | Sed-Chr13:24792996 | 5.10E-102 | dispersed | |
Sed05g0847 | Sed-Chr5:6729889 | Sed13g1994 | Sed-Chr13:24792996 | 7.60E-106 | dispersed | |
Sed05g0848 | Sed-Chr5:6729889 | Sed13g1994 | Sed-Chr13:24792996 | 1.00E-59 | dispersed | |
Sed05g1720 | Sed-Chr5:30987398 | Sed13g1994 | Sed-Chr13:24792996 | 2.00E-184 | dispersed | |
Sed05g1721 | Sed-Chr5:30987398 | Sed13g1994 | Sed-Chr13:24792996 | 2.00E-184 | dispersed | |
Sed11g1161 | Sed-Chr11:27543477 | Sed13g1994 | Sed-Chr13:24792996 | 8.70E-170 | dispersed | |
Sed11g1162 | Sed-Chr11:27543477 | Sed13g1994 | Sed-Chr13:24792996 | 1.20E-169 | dispersed | |
Sed13g1994 | Sed-Chr13:24792996 | Sed14g1325 | Sed-Chr14:22133290 | 1.10E-29 | dispersed | |
Sed11g1159 | Sed-Chr11:27543477 | Sed13g1994 | Sed-Chr13:24792996 | 3.30E-172 | wgd | |
Sed13g1994 | Sed-Chr13:24792996 | Sed03g1630 | Sed-Chr3:10375075 | 8.60E-160 | wgd | |
Sed13g1994 | Sed-Chr13:24792996 | Sed05g1718 | Sed-Chr5:30987398 | 3.40E-188 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40486 | PF03791 | KNOX2 | 3.30E-21 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g1994 | - | - | - | 0.0 |