Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g1998 ATGGGGAAACCAACGGGAAAGAAGAAGGAAAATATTGGGGAGAGGCCTGGAAATGCCAATTCTAAGCCTGCCCGGGCGCCCGACCGGAACTCGAAGGCGTTCGATGAAGATACGGCCATGTTCATTAACATGTCGCAAGAGCTCAAGGAGGAAGGCAACCGGCTGTTCCAGAAGCGAGACCACGAAGGCGCTATGTTGAAATATGAGAAAGCTTTGAAGCTTTTGCCTAGGACTCATATTGATGTGGCTCATCTCCATAGCAATATGGCTGCCTGTTATATGCAATTGGGGTTGGGCGAGTATCCGCGGGCGATTAACGAGTGCAATTTGGCGTTGGAGGCTTATCCGAAGTACAGCAAGGCGCTGCTGAAGAGAGCGAGGTGTTACGAGGCGTTGGGTCGATTCGATCTGGCTTTGAGAGATGTGAATTCTGTGTTGAGCTTGGAGGCTAATAATCTCTCCGCGTTGGAGATTTTGGATAGTGTCAAGAAGGCAATGAGAGAAAAGGGTATTGATGTCGATGAGAAAGAAATCAGGTTGGCGAGTGTGAAGCTGCCTCCCGCAGCGCATTTTCGAAAGGTTGTTAAGGAGAAAGTAAGAAAGAAGAAGAATAAGAAAGTTGAGGAAAAGACAGATGATAAATTGATTGTGGAGGAGAAGGTTGATCCGTTGCCTCAGTTTGATCAGATTGAAGATAAGGAAGTTACAAAAAATGCTATTGAGGAAGATAAATTGCTCGTTGAATCGATCGAGGAAAAACCGGTTTCAAGGACGGTGAAGTTAGTGTTTGGTGAAGACATAAGATGGGCACAGTTACCTACCAATTGCAGCATGAAATTGGTGAGCGAGATAGTTCGAGATCGGTTTCCAAGCTTGAAGGGTGTTCTTGTGAAGTACCGAGATCAAGAGGGTGATTTGGTTACGATTACTACAACAGAGGAGCTGAGGGCCGTTGAATCATGTACTCTACAAGGTTCACTTAGACTGTACATCTCAGAGGTCAGTCCTCATCAGGAACCTGTCTACAAGGAAATCGAAAACACAGAGACGTTTCCAGAGGCTGATAAAAAAGGTGCAGTGGTGGTGAATGGAGATTCAGAAAATGATAAAGAGGTTGTAAGGGGTATGACTACGGTTGAGGATTGGATAGTCCAGTTTGCTCGATTGTTCAAGAACCATGTCGGGGTTGATTCTGATTCGTACTTGGATCTTCATGAGCTTGGAATGAAGTTGTACTCGGAGGCAATGGAGGACAGTGTAACCGGTGATAGTGCTCAAGAACTATTCGAAATTGCTGCTGATAAGTTTCAAGAAATGGCAGCTCTGGCATTCTTCAACTGGGGCAATGTTCACATGTCCAAAGCAAGGAAGCAGGTTTTCTTTCCAGAAGATGCTACGAAAGAAACATTACTTCTTCGGATTAAGGATGCCTACGAATGGGCTCGAAAAGAATACAAAAAGGCCGAAATGAGATATGAAGAAGCTCTAAATGCAAAACCTGACTTCTATGAAGGTTACCTTGCACTTGGCCAGCAGCAGTTTGAGCAAGCTAAGCTTTGCTGGTACTATGCAATTGCGAGTGGAAGCAAAATGAATTTGGAATCGAGCTTTTCCACGGAGGTCTTACAACTTTATAACAAGGCCGAGGACAGCATGGAGAAGGGCATGCTGATGTGGGAAGAAATGGAGGAGCAGCGCTTGAATGGACTCTCCAAAAGTGAAAAATACAGATCTGAATTGGAAAAGATGGGATTAGAAAAACTGTTTAGTGAGATACCTGCTGATGAAGCTGAAGAGCTGGCTTCAAACATGAGATCACAGATATATCTTTTATGGGGAACCTTATTGTACGAGCGTTCTGTCGTGGAATATAAAATCGAGCTACCAACCTGGGAGGAATGTTTGGAGGTGTCGGTGGAGAAGTTCGAACTTTCCGGTGCCTCTCAAACTGATATTGCAGTTATGATAAAGAATCATTGTTCCAACGAAACTGCCCCAGAAGGTTTCGGCTTCAAAATCGATGAGATCGTACAGGCATGGAATGAAATGTATGATGCTAACAGGTGGCAATTTGGTGCACCATCTTTCCGCCTCGAGCCATTGTTTCGACGCAGGGCTCCCAAACTTCACTTCACCTTGGAGCACTTTTGA 2151 44.96 MGKPTGKKKENIGERPGNANSKPARAPDRNSKAFDEDTAMFINMSQELKEEGNRLFQKRDHEGAMLKYEKALKLLPRTHIDVAHLHSNMAACYMQLGLGEYPRAINECNLALEAYPKYSKALLKRARCYEALGRFDLALRDVNSVLSLEANNLSALEILDSVKKAMREKGIDVDEKEIRLASVKLPPAAHFRKVVKEKVRKKKNKKVEEKTDDKLIVEEKVDPLPQFDQIEDKEVTKNAIEEDKLLVESIEEKPVSRTVKLVFGEDIRWAQLPTNCSMKLVSEIVRDRFPSLKGVLVKYRDQEGDLVTITTTEELRAVESCTLQGSLRLYISEVSPHQEPVYKEIENTETFPEADKKGAVVVNGDSENDKEVVRGMTTVEDWIVQFARLFKNHVGVDSDSYLDLHELGMKLYSEAMEDSVTGDSAQELFEIAADKFQEMAALAFFNWGNVHMSKARKQVFFPEDATKETLLLRIKDAYEWARKEYKKAEMRYEEALNAKPDFYEGYLALGQQQFEQAKLCWYYAIASGSKMNLESSFSTEVLQLYNKAEDSMEKGMLMWEEMEEQRLNGLSKSEKYRSELEKMGLEKLFSEIPADEAEELASNMRSQIYLLWGTLLYERSVVEYKIELPTWEECLEVSVEKFELSGASQTDIAVMIKNHCSNETAPEGFGFKIDEIVQAWNEMYDANRWQFGAPSFRLEPLFRRRAPKLHFTLEHF 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24892880 24896661 - Sed0016854.1 Sed13g1998 735508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g1998 716 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515(InterPro)
Sed13g1998 716 MobiDBLite consensus disorder prediction 1 33 - -
Sed13g1998 716 SMART tpr_5 469 502 IPR019734 GO:0005515(InterPro)
Sed13g1998 716 SMART tpr_5 83 118 IPR019734 GO:0005515(InterPro)
Sed13g1998 716 SMART tpr_5 119 152 IPR019734 GO:0005515(InterPro)
Sed13g1998 716 SMART tpr_5 45 78 IPR019734 GO:0005515(InterPro)
Sed13g1998 716 SUPERFAMILY CAD & PB1 domains 245 344 - -
Sed13g1998 716 Gene3D - 246 334 - -
Sed13g1998 716 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515(InterPro)
Sed13g1998 716 Gene3D Tetratricopeptide repeat domain 43 172 IPR011990 GO:0005515(InterPro)
Sed13g1998 716 CDD PB1 258 331 - -
Sed13g1998 716 Coils Coil 478 498 - -
Sed13g1998 716 MobiDBLite consensus disorder prediction 1 15 - -
Sed13g1998 716 SUPERFAMILY TPR-like 35 167 IPR011990 GO:0005515(InterPro)
Sed13g1998 716 SMART PB1_new 256 334 IPR000270 GO:0005515(InterPro)
Sed13g1998 716 PANTHER PROTEIN CLMP1 1 715 IPR044517 -
Sed13g1998 716 Pfam PB1 domain 257 332 IPR000270 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g1998 K26538 - - csv:101217917 1269.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1933 Sed-Chr8:33745226 Sed13g1998 Sed-Chr13:24892880 1.50E-127 dispersed
Sed12g2338 Sed-Chr12:33371463 Sed13g1998 Sed-Chr13:24892880 1.30E-213 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g554 . . . . . . . . . . Cma01g01489 . . . . . . . . . . . . . Cla05g01710 Cam05g1825 Cec05g1837 Cco05g1895 Clacu05g1810 Cmu05g1696 Cre05g1825 . . . . Lsi04g02102 . . . . . . Bda13g01251 . . . . Sed13g1998 Cmo01g01543 . . . . . . . Bhi09g02959 Tan01g3607 Cmetu07g2079 . Hepe01g1993 . . . . . . . . . . . . Cme07g00090
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006619 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 2 37