Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2010 ATGTCGTTCTTTTCCGGTATCTTCCTCGGCGTTGTCGTCGGCGTTTTGCTCATCATCGCCTTTGCTCGCGCCGGAACGACTCGCGCCAAGAAACGCTCCGATTTGGCTGCGACTGTTGCGGCATTTGCGAGGATGACGGCTCAGGACTCGAGAAAGATCCTCCCGAAGGAGTTCTACCCGTCCTGGGTTGTGTTTACGCAGCGGCAAAAGTTAACTTGGCTCAATCATCAGCTTGATAAAATCTGGCCGTATGTTGACGCGGCAGCATCTGAGCTGATTAGGAGCAATGTGGAGCCGGTTCTCGAACAATTTCGACCGGCTGTATTGTCTTCTTTGAAGTTCTCGAAGTTGACCCTCGGTACTGTTGCTCCAAGTTTTACAGGAATCGCTGTGCTTGAAGAAGAGTCAGAAACTGGTGGAATAACCTTGGAGTTGGAGATGCAGTGGGACGGTAATCCAAACATTGTTCTTGACATAAAAACTAAGCTCGGCCTTTCTTTACCAGTACAGGTAAAAGATATTGCATTCACAGGACTTTTCAGATTAATGTTCAAGCCATTGGTTGATGAGTTTCCTTGCTTTGGAGCAGTATGTTATTCTCTGAGAAAAAAGAAAAAACTTGATTTTAAACTTAAGATTATTGGAGGAGACATATCATCTATTCCTGGAGTTTCTGATGCCATTGAGGAAACAATTCGAGATGCAATCGAAGGTAGTATAACGTGGCCGGTTCGGCAGATTGTGCCCATCATAGCAGGAGATTATAGTGATTTAGAGGTAAAGCCTGTTGGAACATTAGAAGTGAAGCTCGTGCAAGCCAAGGAGTTAACAAATAAAGACATTATAGGAAAGTCAGATCCTTATGCTGTGTTGTTTGTACGGCCATTGAAAGAAAGAATGAAAACAAGTAAAACCATTAATAATCAATTGAATCCCATATGGAATGAGCACTTTGATTTCATTGTTGAAGATGAATCTACTCAGCACTTGACTATTAGAGTTTTCGACGACGAAGGAGTACAAGCATCTGAACTAATCGGCTGTGCTCAATTCGCATTAAAGGACCTCGAGCCTGGAAAAGTGAAGGATGTTTGGTTAAAGCTGGTCAAAGATTTGGACATCCAGAGAGATAACAAAAATAGGGGTCAGGTGCATTTGGAGCTTCTTTACTATCCCTTTGGCACTGATCAGAACCTCTATATAAACCCATTTAACCCAGATTATGCATTGACATCGGTGGAGAAGGCTTTAAAGACGCCTCCGAGTGGCGCAGAAGATACGGATTCTGGAAAACCAGGTTCCCCAAAGAAGAGGGATGTGATTGTAAGAGGAGTCCTATCTGTGACAGTGATAGCTGCTGAAGATTTGCCTGCTGTAGATTTCATGGGAAAAGCCGATCCTTATGTTGTTCTCACTATGAAGAAATCCGAGACCAAAGTTAAAACCAGGGTTGTACATGACACCCTGAACCCAGTCTGGAATCAAACGTTTGACTTTCTGGTGGAGGATGCATTACACGATATGCTAATTGTAGAACTCTGGGATCATGACACTTTTGGAAAGGATAAACTAGGGAGGGTGATAATGACACTAACAAGAGCAATATTAGAAGGGGAAATTCAGGACAGTTATCCACTGGAAGGAGCCAAATCAGGTCGAATTTTCCTTCATCTAAAATGGGCAGCTCAGCCAATATTCCGAGATACTTAG 1710 43.39 MSFFSGIFLGVVVGVLLIIAFARAGTTRAKKRSDLAATVAAFARMTAQDSRKILPKEFYPSWVVFTQRQKLTWLNHQLDKIWPYVDAAASELIRSNVEPVLEQFRPAVLSSLKFSKLTLGTVAPSFTGIAVLEEESETGGITLELEMQWDGNPNIVLDIKTKLGLSLPVQVKDIAFTGLFRLMFKPLVDEFPCFGAVCYSLRKKKKLDFKLKIIGGDISSIPGVSDAIEETIRDAIEGSITWPVRQIVPIIAGDYSDLEVKPVGTLEVKLVQAKELTNKDIIGKSDPYAVLFVRPLKERMKTSKTINNQLNPIWNEHFDFIVEDESTQHLTIRVFDDEGVQASELIGCAQFALKDLEPGKVKDVWLKLVKDLDIQRDNKNRGQVHLELLYYPFGTDQNLYINPFNPDYALTSVEKALKTPPSGAEDTDSGKPGSPKKRDVIVRGVLSVTVIAAEDLPAVDFMGKADPYVVLTMKKSETKVKTRVVHDTLNPVWNQTFDFLVEDALHDMLIVELWDHDTFGKDKLGRVIMTLTRAILEGEIQDSYPLEGAKSGRIFLHLKWAAQPIFRDT 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24999223 25004957 + Sed0009299.1 Sed13g2010 735520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2010 569 FunFam Plant synaptotagmin 259 400 - -
Sed13g2010 569 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 443 560 IPR035892 -
Sed13g2010 569 Gene3D C2 domain 256 392 IPR035892 -
Sed13g2010 569 Gene3D C2 domain 435 562 IPR035892 -
Sed13g2010 569 CDD C2 266 368 - -
Sed13g2010 569 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 70 251 IPR039010 -
Sed13g2010 569 CDD SMP_SYT 60 250 - -
Sed13g2010 569 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 4 563 IPR045050 GO:0005783(PANTHER)|GO:0008289(InterPro)
Sed13g2010 569 CDD C2 446 546 - -
Sed13g2010 569 Pfam C2 domain 444 545 IPR000008 -
Sed13g2010 569 Pfam C2 domain 264 368 IPR000008 -
Sed13g2010 569 SMART C2_3c 265 365 IPR000008 -
Sed13g2010 569 SMART C2_3c 445 543 IPR000008 -
Sed13g2010 569 FunFam Extended synaptotagmin-2 425 564 - -
Sed13g2010 569 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 251 IPR031468 GO:0008289(InterPro)
Sed13g2010 569 ProSiteProfiles C2 domain profile. 427 544 IPR000008 -
Sed13g2010 569 PRINTS C2 domain signature 509 517 IPR000008 -
Sed13g2010 569 PRINTS C2 domain signature 461 473 IPR000008 -
Sed13g2010 569 PRINTS C2 domain signature 487 500 IPR000008 -
Sed13g2010 569 ProSiteProfiles C2 domain profile. 245 366 IPR000008 -
Sed13g2010 569 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 262 393 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2010 K28063 - - csv:101210249 1031.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0103 Sed-Chr9:790283 Sed13g2010 Sed-Chr13:24999223 2.90E-76 dispersed
Sed10g1469 Sed-Chr10:31078538 Sed13g2010 Sed-Chr13:24999223 1.80E-244 dispersed
Sed13g2010 Sed-Chr13:24999223 Sed04g2181 Sed-Chr4:35846404 7.10E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70