Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2012 ATGAAGAATGTATGTTGGCCCTACTTTGATCCTGATTTTGATACTCTTCCTGAGAGGATAAATGGCCCAACTTGCAGGGTCTGTATTGACAATGAAAGCATGGAGGATTGCACCATTGTCAAGGTGGATAGCTTGAACAAACAAGGTCTCCTCCTTGAGCTGGTCCAAATTTTGACAGATTTGAACCTTTCCATTTCAAAAAGCTACATTTCTTGTGATGCAGGCTGGTTCATGGATGTTTTTCATGTGAAAGATGAGAACAGCCACAAACTTACCGATCAGAAACTCATCAACTCGATCCAACAGGCACGTAAAAGTCCACTCTTCTTAACCTATGCCAATAGCCTTCTGAAATCTGATAACACTGGCGAGCATACGGCCATCGAAATGACTGGCACCGACCGGCCCGGTCTCTTCTCCGAGATATCCGCTGCATTGGCTGACCTCCATTGCAACGTTGTGGAAGCTCATGCTTGGAGCCACAATGCTCGTTTGGCCTGCATTGCCTACATTTCAGACCAATCTACAGACAGCCCCATTGAGGATCCCCACCGGCTCGCCAACATTGAGGAGCATCTCACCACCGTCCTCAGGGCGGCCACCGCCCCTCCGATCACGAGCTGGACACACGCCCTGCAACAAGAAGTGAATACATCAGCTACCATAACAACCAATGTGGAGCGGCGGCTGCACCAGCTCTTGCTCTCGGTTAAGGATTATGATTGGGCCTCTGGATCTATTTCGAAGAGATCGAAAAGCATTGAAGAACGTAGGAAGTCAATGGTGAGGATAGAAAGCTGTGATCAGAAAGGATATTCAATTGTCAGCATCGAGTGCAAGGATCGGGCGAGGCTTATGTTTGACACAGTTTGTACTCTTACTGATATGCAATATGTCATTTTTCATGCTTCCATTACCTCCAAAGGAGAATATGCTTTTCAGGAGTATTTTATCAGACATGTGAATGGGTATGCCTTGAATTCAGAGAATGACAAGCAAAGGGTGGTTCAGTGCTTAGAGGCGGCCATCGAGCGTCGAGTTTGTGAGGGAGTGAGGCTGGAGTTATGTGCAAACAACAGGGTGGGATTGCTATCAGATATAACAAGGGTACTGAGGGAAAATGGGTTGAATGTGGTGAGAGCAGACATAGCAACACAAGGAGAGAAGGCAATCAATGCATTCTATGTCAAAGACATTTCAGGCAAAGATGTAGACATGGGGATGGTTGAGTCCATGAAGAAGGAAATTGGCCCTGTTGTGCTTCGCGTCAAAACCGAGACAAGCCCTCCATCCACGCCTAAAATTACCAGGACTCGTTTCTCCTTCAGCGACATGCTCAAGTCTCAGATCGAGCGCCTCTCTCACAACTTCATTGCCACCAGGCATTGA 1389 47.16 MKNVCWPYFDPDFDTLPERINGPTCRVCIDNESMEDCTIVKVDSLNKQGLLLELVQILTDLNLSISKSYISCDAGWFMDVFHVKDENSHKLTDQKLINSIQQARKSPLFLTYANSLLKSDNTGEHTAIEMTGTDRPGLFSEISAALADLHCNVVEAHAWSHNARLACIAYISDQSTDSPIEDPHRLANIEEHLTTVLRAATAPPITSWTHALQQEVNTSATITTNVERRLHQLLLSVKDYDWASGSISKRSKSIEERRKSMVRIESCDQKGYSIVSIECKDRARLMFDTVCTLTDMQYVIFHASITSKGEYAFQEYFIRHVNGYALNSENDKQRVVQCLEAAIERRVCEGVRLELCANNRVGLLSDITRVLRENGLNVVRADIATQGEKAINAFYVKDISGKDVDMGMVESMKKEIGPVVLRVKTETSPPSTPKITRTRFSFSDMLKSQIERLSHNFIATRH 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25017727 25020877 - Sed0024554.1 Sed13g2012 735522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2012 462 SUPERFAMILY ACT-like 349 419 IPR045865 -
Sed13g2012 462 ProSiteProfiles ACT domain profile. 352 430 IPR002912 -
Sed13g2012 462 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 24 425 IPR040217 -
Sed13g2012 462 Pfam ACT domain 352 399 IPR002912 -
Sed13g2012 462 ProSiteProfiles ACT domain profile. 39 118 IPR002912 -
Sed13g2012 462 Gene3D - 122 201 - -
Sed13g2012 462 SUPERFAMILY ACT-like 34 97 IPR045865 -
Sed13g2012 462 ProSiteProfiles ACT domain profile. 127 207 IPR002912 -
Sed13g2012 462 Pfam ACT domain 128 172 - -
Sed13g2012 462 SUPERFAMILY ACT-like 122 197 IPR045865 -
Sed13g2012 462 Gene3D - 351 424 - -
Sed13g2012 462 CDD ACT_ACR_3 272 346 - -
Sed13g2012 462 CDD ACT_ACR_2 126 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2012 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0747 Sed-Chr10:5137674 Sed13g2012 Sed-Chr13:25017727 3.20E-109 dispersed
Sed12g0611 Sed-Chr12:3621147 Sed13g2012 Sed-Chr13:25017727 9.50E-103 dispersed
Sed12g0612 Sed-Chr12:3621147 Sed13g2012 Sed-Chr13:25017727 1.90E-85 dispersed
Sed13g2012 Sed-Chr13:25017727 Sed14g0942 Sed-Chr14:18433419 5.80E-63 dispersed
Sed13g2012 Sed-Chr13:25017727 Sed09g0361 Sed-Chr9:3258568 2.70E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g502 . Blo12g01071 . Bda03g00076 . . Bma04g00073 . . . Cma01g01514 . . . . . . . . . . . . . Cla05g01724 Cam05g1837 Cec05g1851 Cco05g1908 Clacu05g1824 Cmu05g1708 Cre05g1839 Cone4ag1777 . . . Lsi04g02116 Csa03g04320 Chy04g00380 . . . . . . Bpe04g00062 . . Sed13g2012 Cmo01g01567 . . . . . . Cpe02g00442 Bhi09g02223 Tan01g3625 Cmetu04g2629 . Hepe01g2008 Mch11g0544 . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011487 0 2 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31