Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g2026 | ATGGTTTATTCGAGGAAGTTCAGAGGAGTCAGGCAACGGCAGTGGGGCTCGTGGGTGTCAGAAATTCGCCACCCATTGCTGAAGAGAAGAGTGTGGCTAGGGACATTCGACACGGCAGAGGATGCCGCACGGGCGTATGATCAAGCAGCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGATCAACATGGAGCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACCAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCATTGACATGCCTGCGTCTCGACAGTGACAACGCCCACATCGGCATCTGGCAGAAGCGTGCAGGCCCTCGAGCTGCCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGACACCGTTGCTGTCGCTGTCGCCGTTGCCCGAGTTGGTGAGCCAGGAAGCTGATGGGCTGGGGAATGGAATTGATGAGGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTGCTCAATTGGAACTACCCTCTTCCTTCAACTTCAAGCTAA | 567 | 52.2 | MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSDQHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIWQKRAGPRAASNWVMRIELGKKETPLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIEELLNWNYPLPSTSS | 188 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 25166544 | 25168445 | + | Sed0021486.1 | Sed13g2026 | 735536 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g2026 | 188 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g2026 | 188 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g2026 | 188 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g2026 | 188 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g2026 | 188 | CDD | AP2 | 6 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g2026 | 188 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 106 | IPR050913 | - | |
Sed13g2026 | 188 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
Sed13g2026 | 188 | Pfam | AP2 domain | 6 | 55 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed13g2026 | 188 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677(InterPro) | |
Sed13g2026 | 188 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g1443 | Sed-Chr10:30652516 | Sed13g2026 | Sed-Chr13:25166544 | 7.60E-56 | dispersed | |
Sed11g1154 | Sed-Chr11:27466876 | Sed13g2026 | Sed-Chr13:25166544 | 2.70E-24 | dispersed | |
Sed12g2379 | Sed-Chr12:33682091 | Sed13g2026 | Sed-Chr13:25166544 | 3.70E-54 | dispersed | |
Sed13g2026 | Sed-Chr13:25166544 | Sed04g3436 | Sed-Chr4:44123467 | 3.90E-18 | dispersed | |
Sed13g2026 | Sed-Chr13:25166544 | Sed05g1699 | Sed-Chr5:30831780 | 1.90E-89 | wgd | |
Sed13g2026 | Sed-Chr13:25166544 | Sed06g2113 | Sed-Chr6:45041480 | 2.50E-25 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40489 | PF00847 | AP2 | 3.70E-13 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g2026 | - | - | - | 0.0 |