Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2026 ATGGTTTATTCGAGGAAGTTCAGAGGAGTCAGGCAACGGCAGTGGGGCTCGTGGGTGTCAGAAATTCGCCACCCATTGCTGAAGAGAAGAGTGTGGCTAGGGACATTCGACACGGCAGAGGATGCCGCACGGGCGTATGATCAAGCAGCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGATCAACATGGAGCTTCTCCATTGTCCCCAAAAGCACTTTCAGAGCTACTCAGCACCAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCCTCATTGACATGCCTGCGTCTCGACAGTGACAACGCCCACATCGGCATCTGGCAGAAGCGTGCAGGCCCTCGAGCTGCCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGACACCGTTGCTGTCGCTGTCGCCGTTGCCCGAGTTGGTGAGCCAGGAAGCTGATGGGCTGGGGAATGGAATTGATGAGGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTGCTCAATTGGAACTACCCTCTTCCTTCAACTTCAAGCTAA 567 52.2 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSDQHGASPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGIWQKRAGPRAASNWVMRIELGKKETPLLSLSPLPELVSQEADGLGNGIDEEDRIAMQMIEELLNWNYPLPSTSS 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25166544 25168445 + Sed0021486.1 Sed13g2026 735536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2026 188 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g2026 188 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g2026 188 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g2026 188 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g2026 188 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g2026 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 106 IPR050913 -
Sed13g2026 188 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Sed13g2026 188 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed13g2026 188 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
Sed13g2026 188 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1443 Sed-Chr10:30652516 Sed13g2026 Sed-Chr13:25166544 7.60E-56 dispersed
Sed11g1154 Sed-Chr11:27466876 Sed13g2026 Sed-Chr13:25166544 2.70E-24 dispersed
Sed12g2379 Sed-Chr12:33682091 Sed13g2026 Sed-Chr13:25166544 3.70E-54 dispersed
Sed13g2026 Sed-Chr13:25166544 Sed04g3436 Sed-Chr4:44123467 3.90E-18 dispersed
Sed13g2026 Sed-Chr13:25166544 Sed05g1699 Sed-Chr5:30831780 1.90E-89 wgd
Sed13g2026 Sed-Chr13:25166544 Sed06g2113 Sed-Chr6:45041480 2.50E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40489 PF00847 AP2 3.70E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2026 - - - 0.0