Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g2048 | ATGGGTAGGGAAAACGCTACTTTTCAAGTCGAGGGGGGCTCTGGTAGAATCACAAGGGCACGGGCAAAAGAGATGGGCGAATCAGGAGGAATTCTATGCTCCTCAAAATCTTCTGGAGTTCAGAAGCCTATTCTACGAGCTAACTTAAAAAGAATGGCATCTTGTGATATTAAGAGTTGTTCAATTTCTTCCAGTGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTTCACCAGAGGTTCTGATAAGAATTGCAGCACTGCTTCTAATATTCAGGGCCCCAAACCATCTCAAAGAGTTTCAGCAAAAGCTAAGGCAAACGTGCCTTTAAATGTTCCTGTACAAATTTTAGGAGAAGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCGAAAATAAGGGTGGTAGAATCACGAGAGGTATCTTTACGAGAAACCTTAGACGAAAATGAGAGAACAATACAAACTATGTGTCACACCAGTAGAGAATGTGGAGTTTCAGATATGATTCCCTCTGTATCTTCAGAACAATCTATCCCTCAGCCAAATGGAGCTGTAGTGACACAATCGTCAGCATCGAAGAATAGAGGCATTATAGACATCGATTCAAAGTCCACACGTCTTCAATCATGCAGCATATATGCTCCAGACATATATAACAGGATACGTGTGACTGAGCTTGATCAAAGGGCCTCAACTAACTATATGGAACAGTTACAGCAAGATATCACTTCAAATATGCGAGAAATATTGGTTGATTGGATTGTAGAGGTTTCGGATGAATGTAGGCTGATTCCAGATACACTATATCTCACTGTGAATATTATTGATCGGTTTCTCTCCCAAAGTTGTATTGAAAAAAAGCGTCTACAACTTCTCGGTGTTGCAAGCATGCTAATTGCATCAAAATATGAGGAGATTTGTGCGCCGCGAGTGGATGATTTCTGCTTCATCACAGATAGTGCTTACACAAAAGGAGAGGTAGTAGAAATGGAGAGTAAAGTTTTGAACTTACTGCATTTTCGGCTATCTGTTCCGACTACGAAGACATTTCTAAGGAGATTCTTACAATCAGCTCAGGCTTCTTACAAGGTTCCTTGCACTGAACTTGGGTTTTTGGCCAATTATTTAGCTGAGTTGACCCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATAGCCGCATCGGCTGTATTTCTCGCGAAATGGACACTTGACGAATCGGATCATCCATGGAATCCAACGCTAGAGTACTATACAAGTTACTCTGCTTCTGAGCTGAAAACTGCAGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAATGGTTCCTCGCTAAATGCCATACGTGAGAAGTATAAACAACCGAAGTTCAAATGTGTAGCGAAATTGACATCCACTCGGTCGGTTCGATCACTGTTTTGA | 1449 | 41.41 | MGRENATFQVEGGSGRITRARAKEMGESGGILCSSKSSGVQKPILRANLKRMASCDIKSCSISSSGLPNKRRAVLKDVTNIFTRGSDKNCSTASNIQGPKPSQRVSAKAKANVPLNVPVQILGEEEDANTRLAEDLSKIRVVESREVSLRETLDENERTIQTMCHTSRECGVSDMIPSVSSEQSIPQPNGAVVTQSSASKNRGIIDIDSKSTRLQSCSIYAPDIYNRIRVTELDQRASTNYMEQLQQDITSNMREILVDWIVEVSDECRLIPDTLYLTVNIIDRFLSQSCIEKKRLQLLGVASMLIASKYEEICAPRVDDFCFITDSAYTKGEVVEMESKVLNLLHFRLSVPTTKTFLRRFLQSAQASYKVPCTELGFLANYLAELTLVEYSFLKFLPSLIAASAVFLAKWTLDESDHPWNPTLEYYTSYSASELKTAVLALQDLQLNTNGSSLNAIREKYKQPKFKCVAKLTSTRSVRSLF | 482 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 25269435 | 25283872 | + | Sed0015174.1 | Sed13g2048 | 735558 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g2048 | 482 | FunFam | Cyclin A1 | 339 | 471 | - | - | |
Sed13g2048 | 482 | SMART | Cyclin_C_2 | 352 | 475 | IPR004367 | - | |
Sed13g2048 | 482 | SMART | cyclin_7 | 356 | 444 | IPR013763 | - | |
Sed13g2048 | 482 | SMART | cyclin_7 | 259 | 343 | IPR013763 | - | |
Sed13g2048 | 482 | Pfam | Cyclin, C-terminal domain | 352 | 473 | IPR004367 | - | |
Sed13g2048 | 482 | SUPERFAMILY | Cyclin-like | 214 | 349 | IPR036915 | - | |
Sed13g2048 | 482 | FunFam | Mitotic cyclin 6 | 237 | 337 | - | - | |
Sed13g2048 | 482 | ProSitePatterns | Cyclins signature. | 254 | 285 | IPR048258 | - | |
Sed13g2048 | 482 | Gene3D | - | 237 | 350 | - | - | |
Sed13g2048 | 482 | SUPERFAMILY | Cyclin-like | 351 | 474 | IPR036915 | - | |
Sed13g2048 | 482 | CDD | CYCLIN_AtCycA-like_rpt2 | 352 | 466 | - | - | |
Sed13g2048 | 482 | PANTHER | CYCLINS | 202 | 463 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Sed13g2048 | 482 | Pfam | Cyclin, N-terminal domain | 223 | 350 | IPR006671 | - | |
Sed13g2048 | 482 | PIRSF | Cyclin_A_B_D_E | 34 | 481 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Sed13g2048 | 482 | Gene3D | - | 223 | 471 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed09g1531 | Sed-Chr9:38921964 | Sed13g2048 | Sed-Chr13:25269435 | 2.10E-106 | dispersed | |
Sed09g1532 | Sed-Chr9:38922285 | Sed13g2048 | Sed-Chr13:25269435 | 2.10E-106 | dispersed | |
Sed13g1791 | Sed-Chr13:22959380 | Sed13g2048 | Sed-Chr13:25269435 | 1.40E-72 | dispersed | |
Sed13g1792 | Sed-Chr13:22959380 | Sed13g2048 | Sed-Chr13:25269435 | 1.40E-72 | dispersed | |
Sed13g2048 | Sed-Chr13:25269435 | Sed14g1250 | Sed-Chr14:21622118 | 2.70E-47 | dispersed | |
Sed01g1333 | Sed-Chr1:9923179 | Sed13g2048 | Sed-Chr13:25269435 | 1.20E-100 | wgd | |
Sed13g2048 | Sed-Chr13:25269435 | Sed05g1679 | Sed-Chr5:30582433 | 1.30E-219 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g2048 | K06627 | - | csv:101204275 | 748.429 |