Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2048 ATGGGTAGGGAAAACGCTACTTTTCAAGTCGAGGGGGGCTCTGGTAGAATCACAAGGGCACGGGCAAAAGAGATGGGCGAATCAGGAGGAATTCTATGCTCCTCAAAATCTTCTGGAGTTCAGAAGCCTATTCTACGAGCTAACTTAAAAAGAATGGCATCTTGTGATATTAAGAGTTGTTCAATTTCTTCCAGTGGCCTTCCTAATAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTTCACCAGAGGTTCTGATAAGAATTGCAGCACTGCTTCTAATATTCAGGGCCCCAAACCATCTCAAAGAGTTTCAGCAAAAGCTAAGGCAAACGTGCCTTTAAATGTTCCTGTACAAATTTTAGGAGAAGAAGAAGATGCAAACACAAGACTAGCTGAGGATTTATCGAAAATAAGGGTGGTAGAATCACGAGAGGTATCTTTACGAGAAACCTTAGACGAAAATGAGAGAACAATACAAACTATGTGTCACACCAGTAGAGAATGTGGAGTTTCAGATATGATTCCCTCTGTATCTTCAGAACAATCTATCCCTCAGCCAAATGGAGCTGTAGTGACACAATCGTCAGCATCGAAGAATAGAGGCATTATAGACATCGATTCAAAGTCCACACGTCTTCAATCATGCAGCATATATGCTCCAGACATATATAACAGGATACGTGTGACTGAGCTTGATCAAAGGGCCTCAACTAACTATATGGAACAGTTACAGCAAGATATCACTTCAAATATGCGAGAAATATTGGTTGATTGGATTGTAGAGGTTTCGGATGAATGTAGGCTGATTCCAGATACACTATATCTCACTGTGAATATTATTGATCGGTTTCTCTCCCAAAGTTGTATTGAAAAAAAGCGTCTACAACTTCTCGGTGTTGCAAGCATGCTAATTGCATCAAAATATGAGGAGATTTGTGCGCCGCGAGTGGATGATTTCTGCTTCATCACAGATAGTGCTTACACAAAAGGAGAGGTAGTAGAAATGGAGAGTAAAGTTTTGAACTTACTGCATTTTCGGCTATCTGTTCCGACTACGAAGACATTTCTAAGGAGATTCTTACAATCAGCTCAGGCTTCTTACAAGGTTCCTTGCACTGAACTTGGGTTTTTGGCCAATTATTTAGCTGAGTTGACCCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATAGCCGCATCGGCTGTATTTCTCGCGAAATGGACACTTGACGAATCGGATCATCCATGGAATCCAACGCTAGAGTACTATACAAGTTACTCTGCTTCTGAGCTGAAAACTGCAGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAATGGTTCCTCGCTAAATGCCATACGTGAGAAGTATAAACAACCGAAGTTCAAATGTGTAGCGAAATTGACATCCACTCGGTCGGTTCGATCACTGTTTTGA 1449 41.41 MGRENATFQVEGGSGRITRARAKEMGESGGILCSSKSSGVQKPILRANLKRMASCDIKSCSISSSGLPNKRRAVLKDVTNIFTRGSDKNCSTASNIQGPKPSQRVSAKAKANVPLNVPVQILGEEEDANTRLAEDLSKIRVVESREVSLRETLDENERTIQTMCHTSRECGVSDMIPSVSSEQSIPQPNGAVVTQSSASKNRGIIDIDSKSTRLQSCSIYAPDIYNRIRVTELDQRASTNYMEQLQQDITSNMREILVDWIVEVSDECRLIPDTLYLTVNIIDRFLSQSCIEKKRLQLLGVASMLIASKYEEICAPRVDDFCFITDSAYTKGEVVEMESKVLNLLHFRLSVPTTKTFLRRFLQSAQASYKVPCTELGFLANYLAELTLVEYSFLKFLPSLIAASAVFLAKWTLDESDHPWNPTLEYYTSYSASELKTAVLALQDLQLNTNGSSLNAIREKYKQPKFKCVAKLTSTRSVRSLF 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25269435 25283872 + Sed0015174.1 Sed13g2048 735558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2048 482 FunFam Cyclin A1 339 471 - -
Sed13g2048 482 SMART Cyclin_C_2 352 475 IPR004367 -
Sed13g2048 482 SMART cyclin_7 356 444 IPR013763 -
Sed13g2048 482 SMART cyclin_7 259 343 IPR013763 -
Sed13g2048 482 Pfam Cyclin, C-terminal domain 352 473 IPR004367 -
Sed13g2048 482 SUPERFAMILY Cyclin-like 214 349 IPR036915 -
Sed13g2048 482 FunFam Mitotic cyclin 6 237 337 - -
Sed13g2048 482 ProSitePatterns Cyclins signature. 254 285 IPR048258 -
Sed13g2048 482 Gene3D - 237 350 - -
Sed13g2048 482 SUPERFAMILY Cyclin-like 351 474 IPR036915 -
Sed13g2048 482 CDD CYCLIN_AtCycA-like_rpt2 352 466 - -
Sed13g2048 482 PANTHER CYCLINS 202 463 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed13g2048 482 Pfam Cyclin, N-terminal domain 223 350 IPR006671 -
Sed13g2048 482 PIRSF Cyclin_A_B_D_E 34 481 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed13g2048 482 Gene3D - 223 471 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1531 Sed-Chr9:38921964 Sed13g2048 Sed-Chr13:25269435 2.10E-106 dispersed
Sed09g1532 Sed-Chr9:38922285 Sed13g2048 Sed-Chr13:25269435 2.10E-106 dispersed
Sed13g1791 Sed-Chr13:22959380 Sed13g2048 Sed-Chr13:25269435 1.40E-72 dispersed
Sed13g1792 Sed-Chr13:22959380 Sed13g2048 Sed-Chr13:25269435 1.40E-72 dispersed
Sed13g2048 Sed-Chr13:25269435 Sed14g1250 Sed-Chr14:21622118 2.70E-47 dispersed
Sed01g1333 Sed-Chr1:9923179 Sed13g2048 Sed-Chr13:25269435 1.20E-100 wgd
Sed13g2048 Sed-Chr13:25269435 Sed05g1679 Sed-Chr5:30582433 1.30E-219 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2048 K06627 - csv:101204275 748.429