Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2079 ATGGGCTGGGAGGAAGGATCACAAGTTTGGGGTTTTATCAAACAAGTATGCGCAGGGCGATGGTTCTCTGTATTCGCGTCGCTTTTGATGATGATGGGAACTGGTACAACTTACATATATGGAACCTACTCGAAAGTGATAAAGACACAATTTGATTACACCCAAACCCAAATTAACACTTTGGGATTTGCTAAGGATTTAGGGTCCAACTTGGGAATCTTTGCGGGACTTCTGGCGGAGGTGGCTCCATCATCAGTTTTGTTCTTCATCTCTGCATTTCTCAACTTCTCATGCTTCTTTATGATTTGGTTATCCATCACCCATCGCATTGCCCGACCCAAATTCTGGCAGATATTTCTTTACATTTGCGTTGGCACAAACTCTTCCAATTTCGCCAACACTGCCATTTTGGTGAACGGCGTTAGAAACTTTCCAGACCGACGAGGTGTTATTTTGGGGCTTCTAAAAGGGTTCGTTGGGATTGGAGGTGCAGTTTTTACTCAACTATATCTGGCGTTCTATGGGAACGATGACCCATCAAATCAAGTTCTTCTCTTCTCTTGGCTTCCGTCCGTGTTGATCCTCATTCTTTTCAGCTCAATTCGACCAATCAATAGTCGAAAGCACCCAGAAGAGTTAAAAGTGTTCTACCACTTGCTTTATATCTCCATACTTTTGGCACTCTTCATTTTATTTCTAACCATTGCACAGAAGCAAACCTCTTTCTCTCACGGTGGCTACGTTAGTGGCGCATGTGTTATCATTGCCACCCTATGCCTACCCCTTCTCATTGCATTTAGAGAAGAATTCTTTCTCTACAAACTCAACCAAAATCCTCATCCTAATTCTTCATCATCTGTCGTCGTTTCAATAATTCCTGAACAACAGCAAGCTGCCTCAAAAGAAATTACTACGCTGCCCACTAATTCCAACAAACCTGCAAGAGGGGATGATTTCACCATCTTACAAGCTATGTTTAGCAAGGATATGACCCTTATTTGCTTGGCTACTTTTTCTGGATGTGGGTCCTCGCTTGCTGCAATTGATAATTTGGGTCAGATTGGAGAATCACTTCACTATCCCCCTCAAGCCATAAGCATCTTCGTTTCTTGGGTTTCTATCTTCAGTTTCTTCGGTCGAGTTTGCTCTGGTTTCATCTCTGAAACCCTCATGGTCAAATACAAATTACCTCGCCCACTCATATTTTCCTTTGCTTTTCTCATCACTTGCATCGGCCAACTATGCATTGCCTTTCCATCCTCTGGGTCTGTTTACGCCGCTTCCTTGATAATCGGGTTCGGGTTTGGATCACAAGTCCCACTACTGTTTGCCATAATCTCTGAACTGTTTGGCCTGAAACATTACTCCACATTGTTTAATTGGGGGCAACTTATAGTTCCACTGGGATCATACATACTAAACGTAGAAGTAGTGGGAAAGTTGTATGATATAGAAGCTTCTAAGGAACACCTAAGGGCAGGTGGAATTGTAGGGAAAGGGCTCACTTGCAATGGAGCTCATTGCTTTAGTGGCTCCTTCACCATTTTGGCTTCATTTACATTATTTGGAGCTCTCAGTATGTTGGTGTTGGCTTATAGGACTAGAGAATTTTACAGAGGTGATGTCTACAACAAGTACAAAGAGGATTTATGGATTCAACAATCCGAAATGGAATTTTATCATTTAGAAAAAAAGAAGAAAGTCACTAACTATTAA 1716 42.02 MGWEEGSQVWGFIKQVCAGRWFSVFASLLMMMGTGTTYIYGTYSKVIKTQFDYTQTQINTLGFAKDLGSNLGIFAGLLAEVAPSSVLFFISAFLNFSCFFMIWLSITHRIARPKFWQIFLYICVGTNSSNFANTAILVNGVRNFPDRRGVILGLLKGFVGIGGAVFTQLYLAFYGNDDPSNQVLLFSWLPSVLILILFSSIRPINSRKHPEELKVFYHLLYISILLALFILFLTIAQKQTSFSHGGYVSGACVIIATLCLPLLIAFREEFFLYKLNQNPHPNSSSSVVVSIIPEQQQAASKEITTLPTNSNKPARGDDFTILQAMFSKDMTLICLATFSGCGSSLAAIDNLGQIGESLHYPPQAISIFVSWVSIFSFFGRVCSGFISETLMVKYKLPRPLIFSFAFLITCIGQLCIAFPSSGSVYAASLIIGFGFGSQVPLLFAIISELFGLKHYSTLFNWGQLIVPLGSYILNVEVVGKLYDIEASKEHLRAGGIVGKGLTCNGAHCFSGSFTILASFTLFGALSMLVLAYRTREFYRGDVYNKYKEDLWIQQSEMEFYHLEKKKKVTNY 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25557416 25559131 + Sed0027618.1 Sed13g2079 735589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2079 571 Gene3D MFS general substrate transporter like domains 329 538 IPR036259 -
Sed13g2079 571 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 19 545 - GO:0016020(PANTHER)
Sed13g2079 571 SUPERFAMILY MFS general substrate transporter 21 536 IPR036259 -
Sed13g2079 571 Pfam Nodulin-like 20 265 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3354 Sed-Chr5:42811066 Sed13g2079 Sed-Chr13:25557416 5.30E-212 dispersed
Sed05g3355 Sed-Chr5:42814985 Sed13g2079 Sed-Chr13:25557416 2.50E-214 dispersed
Sed07g2019 Sed-Chr7:35121868 Sed13g2079 Sed-Chr13:25557416 2.50E-289 dispersed
Sed11g0380 Sed-Chr11:3637781 Sed13g2079 Sed-Chr13:25557416 3.50E-203 dispersed
Sed11g0668 Sed-Chr11:9043730 Sed13g2079 Sed-Chr13:25557416 1.90E-297 dispersed
Sed11g1188 Sed-Chr11:27731790 Sed13g2079 Sed-Chr13:25557416 7.70E-145 dispersed
Sed12g1922 Sed-Chr12:30358727 Sed13g2079 Sed-Chr13:25557416 1.90E-61 dispersed
Sed13g2079 Sed-Chr13:25557416 Sed01g0073 Sed-Chr1:720012 5.80E-230 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2079 - - - 0.0