Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2080 ATGCCTCGTAAGGTGAGACACGGGCAATATTACGACGAAGATTACGACGAATACGAAGATTATGATTATGATTATAACGAAAAAGATTTCGACATAGAAGTAAAAGAAAAAACACCTGAGGCTAAGGAAGAAACAAAGGGTCCTCAGCTTTGGCGATGTCCAATTTGCACTTACTTCAATGAAGAAAGTTTGTCTGTTTGTGATATATGTGGGGTTCTGCGCAACTCTTTGATCAACAACAGCAAAAGTGGTGATGACAGAACAGTTGAGACTATTTGCAAAGACTCTGGAGTATCCATAATGGCCAAGTCTCTCTTTGCATCATCACCAAACCAGATACCCAAAAGGGCTGTTAAATTTCAAGAAAAGAATGATAAATTTGTGGAGGAAAGAGAAGATAACATCCACAAGATTGGGAATATCCAGGGTCATTTGCATGAATTCCATAATGCTTTTAGTACCTGTAGTCAATTCCGTACTAATATAGTCCCTTTCAAGTTTGATACTTCATCCCCAGATGATGTGGTTTCTAATGGACTGCGTTCTTCGAAAGTTGGTTTAAAAGTCAGCCATCAAGGCTTCAACTCTTCATTATTATCTTCAGACATCACTAAGGAAGGTGCAAATAATGCAGCATTGGCTTCAAAAAGTACATATAGCTCGTCAGCTGCATTGCCAAAGGGGAAATTAGGCAGTAAAGGAGATACAAAGTTGAGTACCAAAAGTTCAGACAGCTCGGATACCTCCATTGGAAAAAGTACAGTGGTCACTGAAGAGCACAATACGTCAATTAGTGTAACAAAAAAGTTACAATCATATGATAACAGGTCATCAAGCTCTTCCTCGTCAAAGTCAGCTGGTAAATTTGACAGCATGGATAAGAGCAGTAACCCTTCTGCAGAGTGGGAAAATCCCCAAAGTCTTTCCGGAAGTTTGAATGATATGGTTCTAAATGCCAAGTCGGCATATGAAAATTATATTAGTGGGTTAGGACAAACATCAAATGTGCAGTATAAGCCTGATAAATGGATGCTGCCTGATAAAGCTGTAGATACTTTGGCTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTTTTGCACCTACTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAAGCAAAGTCCTTGGGAAAAGGTTCCTTTGCTTATGCCTGGGCACTAGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACAATGACTGTCGGTGTTGCTTATTTTGATTCTAAAAGATATCATGTTGTTTTGCTCGATTCGCCAGGCCATCAAGATTTTGTTCCAAACATGATATCTGGGGCAACACAAGCTGATGCTGCAGTTCTTGTTATAGATGCTTCTGTTGGTGCATTTGAAGCCGGTATGGACAGTTCTAAGGGGCAAACAAGAGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGGGCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGATCGCTATGACTTAATTAAGCAGCAGCTTGGAACATTTGTTCGTTCTTGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGACTGCCATGGCTAATCAAAATCTGGTGAACGCCCCTTCTGATGTTCGATTGTCGTCCTGGTATCGTGGACCTAATCTGCTGGAGGCAATTGATTCCCTCCAACCACTCACTAGAGATTTCTCTAAGCCACTACTTATGCCGATATGCGACGTTGTCCGATCACTTTCACTTGGACAAGTGTCTTTCTGTGGCAAACTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGGTTCTAGTCATGCCGTCTGGAGATAAAGGCACTGTGCGAACTTTAGAACGCAATTCTCAAGCTTGCAAAATTGCAAGAGCAGGAGACAACGTGACTGTTGGTCTACAAGGAGTTGAAGCTAGTAGTATAGTGTCTGGAGGTGTCCTATGCCATCCTGATTTTCCTATTGCTGTTGCAAATCATTTGGAATTGAAGATTCTTACCTTGGAATCTGCAACTCCGATATTAAAAGGATCGCAGTTGGAAGTTCATATACACCACGTGAAGGAGGCTGCTAGAGTTGCAAAGATAGTGTCATTACTCGATTCGAAGACGGGAAAGGTCACAAAGAAGGCACCGCGTTGTCTCAGTGCTAAACAAAGTGCAGTGATCGAGGTTGTTTTGCAAAGTCCAGTTTGCGTGGAAACATTCTCGACCAGTCGAGCTCTCGGACGGGTATTTCTTAGAGCAACGGGCAGAACTATAGCCGTCGGCATTGTGACCCAACTAATAGGAGATCCTGAATAA 2355 41.61 MPRKVRHGQYYDEDYDEYEDYDYDYNEKDFDIEVKEKTPEAKEETKGPQLWRCPICTYFNEESLSVCDICGVLRNSLINNSKSGDDRTVETICKDSGVSIMAKSLFASSPNQIPKRAVKFQEKNDKFVEEREDNIHKIGNIQGHLHEFHNAFSTCSQFRTNIVPFKFDTSSPDDVVSNGLRSSKVGLKVSHQGFNSSLLSSDITKEGANNAALASKSTYSSSAALPKGKLGSKGDTKLSTKSSDSSDTSIGKSTVVTEEHNTSISVTKKLQSYDNRSSSSSSSKSAGKFDSMDKSSNPSAEWENPQSLSGSLNDMVLNAKSAYENYISGLGQTSNVQYKPDKWMLPDKAVDTLAQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVLLDSPGHQDFVPNMISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVGQIIVAVNKMDVVEYSKDRYDLIKQQLGTFVRSCGYKDSSLSWIPLTAMANQNLVNAPSDVRLSSWYRGPNLLEAIDSLQPLTRDFSKPLLMPICDVVRSLSLGQVSFCGKLEAGALQSGSKVLVMPSGDKGTVRTLERNSQACKIARAGDNVTVGLQGVEASSIVSGGVLCHPDFPIAVANHLELKILTLESATPILKGSQLEVHIHHVKEAARVAKIVSLLDSKTGKVTKKAPRCLSAKQSAVIEVVLQSPVCVETFSTSRALGRVFLRATGRTIAVGIVTQLIGDPE 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25561250 25575071 + Sed0016088.1 Sed13g2080 735590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2080 784 Gene3D Translation factors 581 670 - -
Sed13g2080 784 PANTHER TRANSLATION FACTOR 354 777 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
Sed13g2080 784 FunFam Translation elongation factor EF-1 580 670 - -
Sed13g2080 784 MobiDBLite consensus disorder prediction 235 309 - -
Sed13g2080 784 ProSitePatterns Zinc finger RanBP2-type signature. 51 70 IPR001876 -
Sed13g2080 784 SUPERFAMILY Translation proteins 577 670 IPR009000 -
Sed13g2080 784 MobiDBLite consensus disorder prediction 215 309 - -
Sed13g2080 784 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 592 IPR027417 -
Sed13g2080 784 Gene3D Translation factors 674 781 - -
Sed13g2080 784 SUPERFAMILY Ran binding protein zinc finger-like 47 74 IPR036443 -
Sed13g2080 784 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 353 584 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed13g2080 784 FunFam Elongation factor 1 alpha-like protein 346 576 - -
Sed13g2080 784 PRINTS GTP-binding elongation factor signature 416 424 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed13g2080 784 PRINTS GTP-binding elongation factor signature 452 463 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed13g2080 784 PRINTS GTP-binding elongation factor signature 357 370 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed13g2080 784 PRINTS GTP-binding elongation factor signature 497 506 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed13g2080 784 PRINTS GTP-binding elongation factor signature 436 446 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed13g2080 784 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 676 780 IPR009001 -
Sed13g2080 784 CDD EF1_alpha 357 575 - -
Sed13g2080 784 Pfam GTP-eEF1A C-terminal domain-like 678 777 IPR054696 -
Sed13g2080 784 Pfam Elongation factor Tu domain 2 604 666 IPR004161 GO:0005525(InterPro)
Sed13g2080 784 CDD HBS1_C_III 671 779 - -
Sed13g2080 784 FunFam elongation factor 1-alpha isoform X4 674 783 - -
Sed13g2080 784 Pfam Elongation factor Tu GTP binding domain 356 573 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Sed13g2080 784 Gene3D - 347 577 IPR027417 -
Sed13g2080 784 SMART zf_4 49 73 IPR001876 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0179 Sed-Chr9:1445372 Sed13g2080 Sed-Chr13:25561250 2.60E-76 dispersed
Sed09g0180 Sed-Chr9:1445372 Sed13g2080 Sed-Chr13:25561250 2.60E-76 dispersed
Sed13g2080 Sed-Chr13:25561250 Sed05g1649 Sed-Chr5:30390127 1.80E-274 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2080 K14416 - csv:101219939 1216.83