Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g2080 | ATGCCTCGTAAGGTGAGACACGGGCAATATTACGACGAAGATTACGACGAATACGAAGATTATGATTATGATTATAACGAAAAAGATTTCGACATAGAAGTAAAAGAAAAAACACCTGAGGCTAAGGAAGAAACAAAGGGTCCTCAGCTTTGGCGATGTCCAATTTGCACTTACTTCAATGAAGAAAGTTTGTCTGTTTGTGATATATGTGGGGTTCTGCGCAACTCTTTGATCAACAACAGCAAAAGTGGTGATGACAGAACAGTTGAGACTATTTGCAAAGACTCTGGAGTATCCATAATGGCCAAGTCTCTCTTTGCATCATCACCAAACCAGATACCCAAAAGGGCTGTTAAATTTCAAGAAAAGAATGATAAATTTGTGGAGGAAAGAGAAGATAACATCCACAAGATTGGGAATATCCAGGGTCATTTGCATGAATTCCATAATGCTTTTAGTACCTGTAGTCAATTCCGTACTAATATAGTCCCTTTCAAGTTTGATACTTCATCCCCAGATGATGTGGTTTCTAATGGACTGCGTTCTTCGAAAGTTGGTTTAAAAGTCAGCCATCAAGGCTTCAACTCTTCATTATTATCTTCAGACATCACTAAGGAAGGTGCAAATAATGCAGCATTGGCTTCAAAAAGTACATATAGCTCGTCAGCTGCATTGCCAAAGGGGAAATTAGGCAGTAAAGGAGATACAAAGTTGAGTACCAAAAGTTCAGACAGCTCGGATACCTCCATTGGAAAAAGTACAGTGGTCACTGAAGAGCACAATACGTCAATTAGTGTAACAAAAAAGTTACAATCATATGATAACAGGTCATCAAGCTCTTCCTCGTCAAAGTCAGCTGGTAAATTTGACAGCATGGATAAGAGCAGTAACCCTTCTGCAGAGTGGGAAAATCCCCAAAGTCTTTCCGGAAGTTTGAATGATATGGTTCTAAATGCCAAGTCGGCATATGAAAATTATATTAGTGGGTTAGGACAAACATCAAATGTGCAGTATAAGCCTGATAAATGGATGCTGCCTGATAAAGCTGTAGATACTTTGGCTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTTTTGCACCTACTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAAGCAAAGTCCTTGGGAAAAGGTTCCTTTGCTTATGCCTGGGCACTAGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACAATGACTGTCGGTGTTGCTTATTTTGATTCTAAAAGATATCATGTTGTTTTGCTCGATTCGCCAGGCCATCAAGATTTTGTTCCAAACATGATATCTGGGGCAACACAAGCTGATGCTGCAGTTCTTGTTATAGATGCTTCTGTTGGTGCATTTGAAGCCGGTATGGACAGTTCTAAGGGGCAAACAAGAGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGGGCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGATCGCTATGACTTAATTAAGCAGCAGCTTGGAACATTTGTTCGTTCTTGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGACTGCCATGGCTAATCAAAATCTGGTGAACGCCCCTTCTGATGTTCGATTGTCGTCCTGGTATCGTGGACCTAATCTGCTGGAGGCAATTGATTCCCTCCAACCACTCACTAGAGATTTCTCTAAGCCACTACTTATGCCGATATGCGACGTTGTCCGATCACTTTCACTTGGACAAGTGTCTTTCTGTGGCAAACTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGGTTCTAGTCATGCCGTCTGGAGATAAAGGCACTGTGCGAACTTTAGAACGCAATTCTCAAGCTTGCAAAATTGCAAGAGCAGGAGACAACGTGACTGTTGGTCTACAAGGAGTTGAAGCTAGTAGTATAGTGTCTGGAGGTGTCCTATGCCATCCTGATTTTCCTATTGCTGTTGCAAATCATTTGGAATTGAAGATTCTTACCTTGGAATCTGCAACTCCGATATTAAAAGGATCGCAGTTGGAAGTTCATATACACCACGTGAAGGAGGCTGCTAGAGTTGCAAAGATAGTGTCATTACTCGATTCGAAGACGGGAAAGGTCACAAAGAAGGCACCGCGTTGTCTCAGTGCTAAACAAAGTGCAGTGATCGAGGTTGTTTTGCAAAGTCCAGTTTGCGTGGAAACATTCTCGACCAGTCGAGCTCTCGGACGGGTATTTCTTAGAGCAACGGGCAGAACTATAGCCGTCGGCATTGTGACCCAACTAATAGGAGATCCTGAATAA | 2355 | 41.61 | MPRKVRHGQYYDEDYDEYEDYDYDYNEKDFDIEVKEKTPEAKEETKGPQLWRCPICTYFNEESLSVCDICGVLRNSLINNSKSGDDRTVETICKDSGVSIMAKSLFASSPNQIPKRAVKFQEKNDKFVEEREDNIHKIGNIQGHLHEFHNAFSTCSQFRTNIVPFKFDTSSPDDVVSNGLRSSKVGLKVSHQGFNSSLLSSDITKEGANNAALASKSTYSSSAALPKGKLGSKGDTKLSTKSSDSSDTSIGKSTVVTEEHNTSISVTKKLQSYDNRSSSSSSSKSAGKFDSMDKSSNPSAEWENPQSLSGSLNDMVLNAKSAYENYISGLGQTSNVQYKPDKWMLPDKAVDTLAQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHVVLLDSPGHQDFVPNMISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVGQIIVAVNKMDVVEYSKDRYDLIKQQLGTFVRSCGYKDSSLSWIPLTAMANQNLVNAPSDVRLSSWYRGPNLLEAIDSLQPLTRDFSKPLLMPICDVVRSLSLGQVSFCGKLEAGALQSGSKVLVMPSGDKGTVRTLERNSQACKIARAGDNVTVGLQGVEASSIVSGGVLCHPDFPIAVANHLELKILTLESATPILKGSQLEVHIHHVKEAARVAKIVSLLDSKTGKVTKKAPRCLSAKQSAVIEVVLQSPVCVETFSTSRALGRVFLRATGRTIAVGIVTQLIGDPE | 784 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 25561250 | 25575071 | + | Sed0016088.1 | Sed13g2080 | 735590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g2080 | 784 | Gene3D | Translation factors | 581 | 670 | - | - | |
Sed13g2080 | 784 | PANTHER | TRANSLATION FACTOR | 354 | 777 | IPR050100 | GO:0003924(PANTHER)|GO:0006412(PANTHER) | |
Sed13g2080 | 784 | FunFam | Translation elongation factor EF-1 | 580 | 670 | - | - | |
Sed13g2080 | 784 | MobiDBLite | consensus disorder prediction | 235 | 309 | - | - | |
Sed13g2080 | 784 | ProSitePatterns | Zinc finger RanBP2-type signature. | 51 | 70 | IPR001876 | - | |
Sed13g2080 | 784 | SUPERFAMILY | Translation proteins | 577 | 670 | IPR009000 | - | |
Sed13g2080 | 784 | MobiDBLite | consensus disorder prediction | 215 | 309 | - | - | |
Sed13g2080 | 784 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 355 | 592 | IPR027417 | - | |
Sed13g2080 | 784 | Gene3D | Translation factors | 674 | 781 | - | - | |
Sed13g2080 | 784 | SUPERFAMILY | Ran binding protein zinc finger-like | 47 | 74 | IPR036443 | - | |
Sed13g2080 | 784 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 353 | 584 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed13g2080 | 784 | FunFam | Elongation factor 1 alpha-like protein | 346 | 576 | - | - | |
Sed13g2080 | 784 | PRINTS | GTP-binding elongation factor signature | 416 | 424 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed13g2080 | 784 | PRINTS | GTP-binding elongation factor signature | 452 | 463 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed13g2080 | 784 | PRINTS | GTP-binding elongation factor signature | 357 | 370 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed13g2080 | 784 | PRINTS | GTP-binding elongation factor signature | 497 | 506 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed13g2080 | 784 | PRINTS | GTP-binding elongation factor signature | 436 | 446 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed13g2080 | 784 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 676 | 780 | IPR009001 | - | |
Sed13g2080 | 784 | CDD | EF1_alpha | 357 | 575 | - | - | |
Sed13g2080 | 784 | Pfam | GTP-eEF1A C-terminal domain-like | 678 | 777 | IPR054696 | - | |
Sed13g2080 | 784 | Pfam | Elongation factor Tu domain 2 | 604 | 666 | IPR004161 | GO:0005525(InterPro) | |
Sed13g2080 | 784 | CDD | HBS1_C_III | 671 | 779 | - | - | |
Sed13g2080 | 784 | FunFam | elongation factor 1-alpha isoform X4 | 674 | 783 | - | - | |
Sed13g2080 | 784 | Pfam | Elongation factor Tu GTP binding domain | 356 | 573 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed13g2080 | 784 | Gene3D | - | 347 | 577 | IPR027417 | - | |
Sed13g2080 | 784 | SMART | zf_4 | 49 | 73 | IPR001876 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed09g0179 | Sed-Chr9:1445372 | Sed13g2080 | Sed-Chr13:25561250 | 2.60E-76 | dispersed | |
Sed09g0180 | Sed-Chr9:1445372 | Sed13g2080 | Sed-Chr13:25561250 | 2.60E-76 | dispersed | |
Sed13g2080 | Sed-Chr13:25561250 | Sed05g1649 | Sed-Chr5:30390127 | 1.80E-274 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g2080 | K14416 | - | csv:101219939 | 1216.83 |