Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2081 ATGAGGGGACTAACCTGCAATTCCTGCAACAAAGAATTCTTCGACGCCGATGAGCAAAAGCTTCACTACAGATCCGAATGGCATCGCTACAATCTTAAGCGCAAGGTAGCTAATGTTCCTGGGGTTACAGAGGCGTTGTTCTTAGCTAGACAATCTGCTGCTGTTGCACAAGAGAATGCCAATTCAAGAGAGACCTCAATGTTATACTCTTGCGGTCTTTGTAGCAAAGCTTATAGAAGTTCCCAGGCTCATGCTCAACATCTCAAATCTAGGAGCCACATCATCCTAACTTCGCAAGGAACACATGATCAAGAAGTTGAAAAGCCAATAATTAAGCCTCTTTCTCAGCGAATTAGCAATACGGTTCCGCAACAAAACGAGGAGGAAGAGAGCGAGGAGGAGTGGGAGGAAGTTGACCCTGACGAAGACATGATTGATGCGAATTATTCTGATGATTCTGATGCTATTGAGGTGGACTTGGATCCATCATGCTGCTTCATGTGTGATTTAGAGCATGATACCATTGATAGCTGCATAATCCACATGCTTAAGCAACATGGATTTTTTATTCCTGATGTTGAATATTTGAAGGATCCGAAGGGCTTCCTAACATACCTCGGCTTGAAGGTGATGAGGGATTTCAGGTGTCTGTACTGCAACGATAATTGTCTTCCATTTAGCAGCTTGGAAGCAGTCAGGAAGCATATGGAAGCGAAAAGCCATTGCAAAGTGCATTATGGTGATGGAGATGAGAATGAAGAAGTAGAACTAGAAGAATTTTATGATTACAGTAGCAGTTATGTGGATGGAAGTGGCAACCAGCTAGTGGCATCAGGGGATGGAGCCCATTCTGTTCAACTTGGTAGTGGTGGGGCTGAGCTGATCTTAGTTCAAAGAACTACCGAGCGGCAATCGACCAAAACACTTGGTTCCAGGCAATTTCTACGATATTATCGTCAAAAACCACGACCATCTCCTGCAAATGATGCAGCCATAACTGCTGCATTAGCAGCAAGGTACAGGAGCATGGGATTGGCAACTGTCCAGTCAAGAGAGAGGATGATCAGGATGAAGGTGATGAAAGAAATGAATCGAACCGGATTGGAAGCTATGCGCACCAAAGTCGGGTTGAAGAACAACGTAATCCGAAACCTCCCTAAGAATGTTCCACATTAG 1176 44.39 MRGLTCNSCNKEFFDADEQKLHYRSEWHRYNLKRKVANVPGVTEALFLARQSAAVAQENANSRETSMLYSCGLCSKAYRSSQAHAQHLKSRSHIILTSQGTHDQEVEKPIIKPLSQRISNTVPQQNEEEESEEEWEEVDPDEDMIDANYSDDSDAIEVDLDPSCCFMCDLEHDTIDSCIIHMLKQHGFFIPDVEYLKDPKGFLTYLGLKVMRDFRCLYCNDNCLPFSSLEAVRKHMEAKSHCKVHYGDGDENEEVELEEFYDYSSSYVDGSGNQLVASGDGAHSVQLGSGGAELILVQRTTERQSTKTLGSRQFLRYYRQKPRPSPANDAAITAALAARYRSMGLATVQSRERMIRMKVMKEMNRTGLEAMRTKVGLKNNVIRNLPKNVPH 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25576375 25580337 - Sed0004467.1 Sed13g2081 735591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2081 391 PANTHER ZINC FINGER PROTEIN 622 1 389 IPR040025 GO:0030687(PANTHER)|GO:0042273(PANTHER)
Sed13g2081 391 MobiDBLite consensus disorder prediction 118 148 - -
Sed13g2081 391 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Sed13g2081 391 ProSitePatterns Zinc finger C2H2 type domain signature. 71 93 IPR013087 -
Sed13g2081 391 Pfam C2H2 type zinc-finger (2 copies) 165 267 IPR041661 -
Sed13g2081 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 93 IPR013087 -
Sed13g2081 391 MobiDBLite consensus disorder prediction 126 148 - -
Sed13g2081 391 SUPERFAMILY beta-beta-alpha zinc fingers 150 201 IPR036236 -
Sed13g2081 391 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Sed13g2081 391 SMART c2h2final6 214 241 IPR013087 -
Sed13g2081 391 SMART c2h2final6 4 28 IPR013087 -
Sed13g2081 391 SMART c2h2final6 163 186 IPR013087 -
Sed13g2081 391 SMART c2h2final6 69 93 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g2081 Sed-Chr13:25576375 Sed05g1647 Sed-Chr5:30351705 3.90E-185 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40497 PF12756 zf-C2H2_2 4.70E-25 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2081 K14816 - csv:101219700 676.396