Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2085 ATGAAATTCAAAACCTTTCATTTTCTCCCCTTTTTTCTTCTCCTCCATCTCTCAACTTGCTGTTTTGGTAAGCTTCATCTCAACCATTACCATAATTCATGTCCAAATGTTGAGTCCATTGTTAGAGCTGCTGTGAAATTGAAGTTTGAACAGACTTTTGTCACTGCCCCTGCCACTCTCAGGCTCTTTTTTCATGATTGTTTTGTCAGGGGTTGTGATGCATCTGTGCTGCTTCATTCAAATGATCACACTTCTGAGAAAGACAATGCTGAGAATCTTTCGCTCGCCGGTGACGGGTTTGACACCGTGATCAAAGCTAAGGCCGCAGTCGATAGCGTACCGGAATGTAAGAACAAGGTGTCTTGTGCTGACATATTGGCTTTGGCTACTAGAGATGTTGTAGCTTTGACAGGAGGACCGTCGTATGCCGTGGAGTTAGGAAGGCGAGATGGGCGAATCTCGACACAAAAGAGCGTTCGACACCATCTTCCTTTACCTGATTTTGGATTAGATCAGCTCAATGCCATGTTTGCAAAACATGGTCTAACTCAAACAGATATGGTTGCTCTGTCAGGTGCACATACAATTGGATTCTCACATTGCAAGCACTTCACCAAAAGGCTCTACAGCTTCCACAGCAAGAACCGAATCGACCCGACGTTCAATACGACATATGTGAACGAGCTCAAGAGGGAATGCCCGAGAAATGTCGACCAGAGGATCGCTGTGGATATGGACTCGGCATCGTCGTTCACATTCGACAACGTGTACTTCAAGAATTTGCAGAAGGGAAAAGGACTGTTCACCTCAGACCAAGTGTTGTTCACTGATCCAAGATCAAGAAAAACAGTGAATTTGTTTGCTTCCAACAACTCAGCTTTTGAAGAGGCTTTTGTGATTGCAATGACAAAGCTTGGGAGAGTGAATGTCAAAACAAAAAATCAAGGGGAGATTAGAATTGATTGTTCTTCAATCAACTAA 981 43.63 MKFKTFHFLPFFLLLHLSTCCFGKLHLNHYHNSCPNVESIVRAAVKLKFEQTFVTAPATLRLFFHDCFVRGCDASVLLHSNDHTSEKDNAENLSLAGDGFDTVIKAKAAVDSVPECKNKVSCADILALATRDVVALTGGPSYAVELGRRDGRISTQKSVRHHLPLPDFGLDQLNAMFAKHGLTQTDMVALSGAHTIGFSHCKHFTKRLYSFHSKNRIDPTFNTTYVNELKRECPRNVDQRIAVDMDSASSFTFDNVYFKNLQKGKGLFTSDQVLFTDPRSRKTVNLFASNNSAFEEAFVIAMTKLGRVNVKTKNQGEIRIDCSSIN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25598754 25600300 - Sed0001323.1 Sed13g2085 735595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2085 326 ProSiteProfiles Plant heme peroxidase family profile. 24 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 FunFam Peroxidase 28 171 - -
Sed13g2085 326 PANTHER - 13 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Sed13g2085 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Sed13g2085 326 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 CDD secretory_peroxidase 24 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed13g2085 326 Pfam Peroxidase 41 290 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 FunFam Peroxidase 164 305 - -
Sed13g2085 326 SUPERFAMILY Heme-dependent peroxidases 25 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2085 326 Gene3D - 28 326 - -
Sed13g2085 326 Gene3D Peroxidase, domain 2 164 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g2085 Sed-Chr13:25598754 Sed14g0905 Sed-Chr14:17988303 2.80E-112 dispersed
Sed13g2085 Sed-Chr13:25598754 Sed13g2086 Sed-Chr13:25598754 6.60E-146 tandem
Sed13g2085 Sed-Chr13:25598754 Sed05g1641 Sed-Chr5:30313778 9.90E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2085 K00430 - csv:101218982 583.948