Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2086 ATGTTTGTGAGACAGGGTTGTGATGCATCTGTGCTGCTTCATTCAAATGATCACACTTCTGAGAAAGACAATGCTGAGAATCTTTCGCTCGCCGGTGACGGGTTTGACACCGTGATCAAAGCTAAGGCCGCAGTCGATAGCGTACCGGAATGTAAGAACAAGGTGTCTTGTGCTGACATATTGGCTTTGGCTACTAGAGATGTTGTAGCTTTGACAGGAGGACCGTCGTATGCCGTGGAGTTAGGAAGGCGAGATGGGCGAATCTCGACACAAAAGAGCGTTCGACACCATCTTCCTTTACCTGATTTTGGATTAGATCAGCTCAATGCCATGTTTGCAAAACATGGTCTAACTCAAACAGATATGGTTGCTCTGTCAGGTGCACATACAATTGGATTCTCACATTGCAAGCACTTCACCAAAAGGCTCTACAGCTTCCACAGCAAGAACCGAATCGACCCGACGTTCAATACGACATATGTGAACGAGCTCAAGAGGGAATGCCCGAGAAATGTCGACCAGAGGATCGCTGTGGATATGGACTCGGCATCGTCGTTCACATTCGACAACGTGTACTTCAAGAATTTGCAGAAGGGAAAAGGACTGTTCACCTCAGACCAAGTGTTGTTCACTGATCCAAGATCAAGAAAAACAGTGAATTTGTTTGCTTCCAACAACTCAGCTTTTGAAGAGGCTTTTGTGATTGCAATGACAAAGCTTGGGAGAGTGAATGTCAAAACAAAAAATCAAGGGGAGATTAGAATTGATTGTTCTTCAATCAACTAA 786 44.78 MFVRQGCDASVLLHSNDHTSEKDNAENLSLAGDGFDTVIKAKAAVDSVPECKNKVSCADILALATRDVVALTGGPSYAVELGRRDGRISTQKSVRHHLPLPDFGLDQLNAMFAKHGLTQTDMVALSGAHTIGFSHCKHFTKRLYSFHSKNRIDPTFNTTYVNELKRECPRNVDQRIAVDMDSASSFTFDNVYFKNLQKGKGLFTSDQVLFTDPRSRKTVNLFASNNSAFEEAFVIAMTKLGRVNVKTKNQGEIRIDCSSIN 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25598754 25600300 - Sed0001323.2 Sed13g2086 735596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2086 261 PANTHER - 4 261 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 PRINTS Plant peroxidase signature 33 46 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 PRINTS Plant peroxidase signature 195 212 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 PRINTS Plant peroxidase signature 120 132 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 PRINTS Plant peroxidase signature 179 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 PRINTS Plant peroxidase signature 54 64 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 PRINTS Plant peroxidase signature 73 88 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 PRINTS Plant peroxidase signature 235 248 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 ProSiteProfiles Plant heme peroxidase family profile. 5 261 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 SUPERFAMILY Heme-dependent peroxidases 3 261 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 Gene3D - 5 261 - -
Sed13g2086 261 CDD secretory_peroxidase 2 260 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed13g2086 261 ProSitePatterns Peroxidases proximal heme-ligand signature. 121 131 IPR019793 -
Sed13g2086 261 Gene3D Peroxidase, domain 2 99 240 - -
Sed13g2086 261 PRINTS Haem peroxidase superfamily signature 73 85 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 PRINTS Haem peroxidase superfamily signature 121 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 PRINTS Haem peroxidase superfamily signature 55 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed13g2086 261 FunFam Peroxidase 99 240 - -
Sed13g2086 261 Pfam Peroxidase 2 225 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1641 Sed-Chr5:30313778 Sed13g2086 Sed-Chr13:25598754 2.00E-101 dispersed
Sed13g2086 Sed-Chr13:25598754 Sed14g0905 Sed-Chr14:17988303 4.40E-92 dispersed
Sed13g2085 Sed-Chr13:25598754 Sed13g2086 Sed-Chr13:25598754 6.60E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2086 K00430 - csv:101218982 483.026