Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2093 ATGGCGGTCGATCTCATGAGCTTCCATAAGATGGATGAACAGATAGCCATACAGGAGGCTGCATCGCAGGGACTGAAGAGCATGGAGCATCTCATCCGTCTTCTCTCTCACAACCAACCTTCAAACCACGTCGATTGCTCCGATCTCACCGACGCGACGGTTTCGAAGTTCAAGAAAGTGATCTCTCTCCTCAACCGGACCGGCCACGCCAGATTCCGGCGAGGTCCGGCCGCATCCGCTTCAGATCCTCAACATCAATCCACAAATCTCGCTCCTCCTCCTCCTCCTCCGCCGTTCACCGTCTCCAACTTTCTCCAGTCGCAACCGCAAAGCATGACGCTCGATTTCACCAGACCGAACGTGTTGAACTCGAATCTCAAGGGAGGAGCGGATGTGGAAACGTTTAGCGTTTCTTCGAGTTCGTCGTTTATGTCCTCTGCCATCACTGGCGACGGCAGCGTCTCCAACGGAAAGTTAGACGCGTCGATCTTTTTGGCGCCTGCTCAGACGGCTTCCGGCGGGAAACCGCCTCTTTCGGCGGCGCCGTACAAGAAGAGGTGCCACGAACACGATCATTCCGAGAACTTTTCCGGCAAACTCTCCGGCTCTGCGTCTGGTTCCGGCAAGTGCCATTGCTCTAAGAGAAGAAAAAATCGGATGAAGAAGACGATTCGGGTGCCGGCGGTTAGTTCAAAGATCGCCGATATTCCACCTGACGAGTACTCGTGGAGGAAGTACGGTCAGAAGCCGATCAAGGGATCTCCATATCCACGAGGATATTATAAGTGTAGCACGGTAAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAAAGATCCGGCCATGTTGATTGTAACCTATGAAGGGGAGCACCGCCACACGCAGAGCTCGTTGCCGGAAAATATGGCCGCCGCCGCCGCCGTCGGTGTAGCTTTAGTTTTTGACTCAACTTGA 960 54.38 MAVDLMSFHKMDEQIAIQEAASQGLKSMEHLIRLLSHNQPSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPAASASDPQHQSTNLAPPPPPPPFTVSNFLQSQPQSMTLDFTRPNVLNSNLKGGADVETFSVSSSSSFMSSAITGDGSVSNGKLDASIFLAPAQTASGGKPPLSAAPYKKRCHEHDHSENFSGKLSGSASGSGKCHCSKRRKNRMKKTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERDPKDPAMLIVTYEGEHRHTQSSLPENMAAAAAVGVALVFDST 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25655946 25658277 - Sed0010336.1 Sed13g2093 735603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2093 319 Gene3D WRKY domain 216 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g2093 319 SMART WRKY_cls 237 297 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g2093 319 MobiDBLite consensus disorder prediction 74 98 - -
Sed13g2093 319 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 299 IPR044810 GO:0003700(InterPro)
Sed13g2093 319 Pfam WRKY DNA -binding domain 239 295 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g2093 319 ProSiteProfiles WRKY domain profile. 232 298 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g2093 319 FunFam WRKY transcription factor 65 221 298 - -
Sed13g2093 319 Pfam Plant zinc cluster domain 184 235 IPR018872 -
Sed13g2093 319 SUPERFAMILY WRKY DNA-binding domain 235 297 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1639 Sed-Chr5:30297805 Sed13g2093 Sed-Chr13:25655946 6.90E-111 dispersed
Sed08g0447 Sed-Chr8:2773120 Sed13g2093 Sed-Chr13:25655946 9.90E-74 dispersed
Sed10g0657 Sed-Chr10:4510509 Sed13g2093 Sed-Chr13:25655946 1.10E-58 dispersed
Sed13g1775 Sed-Chr13:22795985 Sed13g2093 Sed-Chr13:25655946 3.50E-54 dispersed
Sed13g2093 Sed-Chr13:25655946 Sed14g0865 Sed-Chr14:17452343 2.40E-44 dispersed
Sed13g2093 Sed-Chr13:25655946 Sed13g2094 Sed-Chr13:25655946 9.00E-140 tandem
Sed13g2093 Sed-Chr13:25655946 Sed05g1638 Sed-Chr5:30297805 8.70E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40498 PF03106 WRKY 1.30E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2093 - - - 0.0