Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g2093 | ATGGCGGTCGATCTCATGAGCTTCCATAAGATGGATGAACAGATAGCCATACAGGAGGCTGCATCGCAGGGACTGAAGAGCATGGAGCATCTCATCCGTCTTCTCTCTCACAACCAACCTTCAAACCACGTCGATTGCTCCGATCTCACCGACGCGACGGTTTCGAAGTTCAAGAAAGTGATCTCTCTCCTCAACCGGACCGGCCACGCCAGATTCCGGCGAGGTCCGGCCGCATCCGCTTCAGATCCTCAACATCAATCCACAAATCTCGCTCCTCCTCCTCCTCCTCCGCCGTTCACCGTCTCCAACTTTCTCCAGTCGCAACCGCAAAGCATGACGCTCGATTTCACCAGACCGAACGTGTTGAACTCGAATCTCAAGGGAGGAGCGGATGTGGAAACGTTTAGCGTTTCTTCGAGTTCGTCGTTTATGTCCTCTGCCATCACTGGCGACGGCAGCGTCTCCAACGGAAAGTTAGACGCGTCGATCTTTTTGGCGCCTGCTCAGACGGCTTCCGGCGGGAAACCGCCTCTTTCGGCGGCGCCGTACAAGAAGAGGTGCCACGAACACGATCATTCCGAGAACTTTTCCGGCAAACTCTCCGGCTCTGCGTCTGGTTCCGGCAAGTGCCATTGCTCTAAGAGAAGAAAAAATCGGATGAAGAAGACGATTCGGGTGCCGGCGGTTAGTTCAAAGATCGCCGATATTCCACCTGACGAGTACTCGTGGAGGAAGTACGGTCAGAAGCCGATCAAGGGATCTCCATATCCACGAGGATATTATAAGTGTAGCACGGTAAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAAAGATCCGGCCATGTTGATTGTAACCTATGAAGGGGAGCACCGCCACACGCAGAGCTCGTTGCCGGAAAATATGGCCGCCGCCGCCGCCGTCGGTGTAGCTTTAGTTTTTGACTCAACTTGA | 960 | 54.38 | MAVDLMSFHKMDEQIAIQEAASQGLKSMEHLIRLLSHNQPSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPAASASDPQHQSTNLAPPPPPPPFTVSNFLQSQPQSMTLDFTRPNVLNSNLKGGADVETFSVSSSSSFMSSAITGDGSVSNGKLDASIFLAPAQTASGGKPPLSAAPYKKRCHEHDHSENFSGKLSGSASGSGKCHCSKRRKNRMKKTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERDPKDPAMLIVTYEGEHRHTQSSLPENMAAAAAVGVALVFDST | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 25655946 | 25658277 | - | Sed0010336.1 | Sed13g2093 | 735603 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g2093 | 319 | Gene3D | WRKY domain | 216 | 290 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed13g2093 | 319 | SMART | WRKY_cls | 237 | 297 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed13g2093 | 319 | MobiDBLite | consensus disorder prediction | 74 | 98 | - | - | |
Sed13g2093 | 319 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 16 | 299 | IPR044810 | GO:0003700(InterPro) | |
Sed13g2093 | 319 | Pfam | WRKY DNA -binding domain | 239 | 295 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed13g2093 | 319 | ProSiteProfiles | WRKY domain profile. | 232 | 298 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed13g2093 | 319 | FunFam | WRKY transcription factor 65 | 221 | 298 | - | - | |
Sed13g2093 | 319 | Pfam | Plant zinc cluster domain | 184 | 235 | IPR018872 | - | |
Sed13g2093 | 319 | SUPERFAMILY | WRKY DNA-binding domain | 235 | 297 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1639 | Sed-Chr5:30297805 | Sed13g2093 | Sed-Chr13:25655946 | 6.90E-111 | dispersed | |
Sed08g0447 | Sed-Chr8:2773120 | Sed13g2093 | Sed-Chr13:25655946 | 9.90E-74 | dispersed | |
Sed10g0657 | Sed-Chr10:4510509 | Sed13g2093 | Sed-Chr13:25655946 | 1.10E-58 | dispersed | |
Sed13g1775 | Sed-Chr13:22795985 | Sed13g2093 | Sed-Chr13:25655946 | 3.50E-54 | dispersed | |
Sed13g2093 | Sed-Chr13:25655946 | Sed14g0865 | Sed-Chr14:17452343 | 2.40E-44 | dispersed | |
Sed13g2093 | Sed-Chr13:25655946 | Sed13g2094 | Sed-Chr13:25655946 | 9.00E-140 | tandem | |
Sed13g2093 | Sed-Chr13:25655946 | Sed05g1638 | Sed-Chr5:30297805 | 8.70E-143 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40498 | PF03106 | WRKY | 1.30E-25 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g2093 | - | - | - | 0.0 |