Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2094 ATGGCGGTCGATCTCATGAGCTTCCATAAGATGGATGAACAGATAGCCATACAGGAGGCTGCATCGCAGGGACTGAAGAGCATGGAGCATCTCATCCGTCTTCTCTCTCACAACCAACCTTCAAACCACGTCGATTGCTCCGATCTCACCGACGCGACGGTTTCGAAGTTCAAGAAAGTGATCTCTCTCCTCAACCGGACCGGCCACGCCAGATTCCGGCGAGGTCCGGCCGCATCCGCTTCAGATCCTCAACATCAATCCACAAATCTCGCTCCTCCTCCTCCTCCTCCGCCGTTCACCGTCTCCAACTTTCTCCAGTCGCAACCGCAAAGCATGACGCTCGATTTCACCAGACCGAACGTGTTGAACTCGAATCTCAAGGGAGGAGCGGATGTGGAAACGTTTAGCGTTTCTTCGAGTTCGTCGTTTATGTCCTCTGCCATCACTGGCGACGGCAGCGTCTCCAACGGAAAGTTAGACGCGTCGATCTTTTTGGCGCCTGCTCAGACGGCTTCCGGCGGGAAACCGCCTCTTTCGGCGGCGCCGTACAAGAAGAGGTGCCACGAACACGATCATTCCGAGAACTTTTCCGGCAAACTCTCCGGCTCTGCGTCTGGTTCCGGCAAGTGCCATTGCTCTAAGAGAAGAAAAAATCGGATGAAGAAGACGATTCGGGTGCCGGCGGTTAGTTCAAAGATCGCCGATATTCCACCTGACGAGTACTCGTGGAGGAAGTACGGTCAGAAGCCGATCAAGGGATCTCCATATCCACGGTGA 777 54.57 MAVDLMSFHKMDEQIAIQEAASQGLKSMEHLIRLLSHNQPSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPAASASDPQHQSTNLAPPPPPPPFTVSNFLQSQPQSMTLDFTRPNVLNSNLKGGADVETFSVSSSSSFMSSAITGDGSVSNGKLDASIFLAPAQTASGGKPPLSAAPYKKRCHEHDHSENFSGKLSGSASGSGKCHCSKRRKNRMKKTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPR 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25655946 25658277 - Sed0010336.2 Sed13g2094 735604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2094 258 MobiDBLite consensus disorder prediction 74 98 - -
Sed13g2094 258 Pfam Plant zinc cluster domain 184 235 IPR018872 -
Sed13g2094 258 SUPERFAMILY WRKY DNA-binding domain 235 258 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g2094 258 Gene3D WRKY domain 216 258 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g2094 258 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 258 IPR044810 GO:0003700(InterPro)
Sed13g2094 258 MobiDBLite consensus disorder prediction 192 223 - -
Sed13g2094 258 ProSiteProfiles WRKY domain profile. 232 258 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed13g2094 258 Pfam WRKY DNA -binding domain 239 258 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1638 Sed-Chr5:30297805 Sed13g2094 Sed-Chr13:25655946 8.50E-111 dispersed
Sed13g2094 Sed-Chr13:25655946 Sed14g0865 Sed-Chr14:17452343 7.30E-23 dispersed
Sed13g2093 Sed-Chr13:25655946 Sed13g2094 Sed-Chr13:25655946 9.00E-140 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40499 PF10533 Plant_zn_clust 1.00E-19 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2094 - - - 0.0