Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g2094 | ATGGCGGTCGATCTCATGAGCTTCCATAAGATGGATGAACAGATAGCCATACAGGAGGCTGCATCGCAGGGACTGAAGAGCATGGAGCATCTCATCCGTCTTCTCTCTCACAACCAACCTTCAAACCACGTCGATTGCTCCGATCTCACCGACGCGACGGTTTCGAAGTTCAAGAAAGTGATCTCTCTCCTCAACCGGACCGGCCACGCCAGATTCCGGCGAGGTCCGGCCGCATCCGCTTCAGATCCTCAACATCAATCCACAAATCTCGCTCCTCCTCCTCCTCCTCCGCCGTTCACCGTCTCCAACTTTCTCCAGTCGCAACCGCAAAGCATGACGCTCGATTTCACCAGACCGAACGTGTTGAACTCGAATCTCAAGGGAGGAGCGGATGTGGAAACGTTTAGCGTTTCTTCGAGTTCGTCGTTTATGTCCTCTGCCATCACTGGCGACGGCAGCGTCTCCAACGGAAAGTTAGACGCGTCGATCTTTTTGGCGCCTGCTCAGACGGCTTCCGGCGGGAAACCGCCTCTTTCGGCGGCGCCGTACAAGAAGAGGTGCCACGAACACGATCATTCCGAGAACTTTTCCGGCAAACTCTCCGGCTCTGCGTCTGGTTCCGGCAAGTGCCATTGCTCTAAGAGAAGAAAAAATCGGATGAAGAAGACGATTCGGGTGCCGGCGGTTAGTTCAAAGATCGCCGATATTCCACCTGACGAGTACTCGTGGAGGAAGTACGGTCAGAAGCCGATCAAGGGATCTCCATATCCACGGTGA | 777 | 54.57 | MAVDLMSFHKMDEQIAIQEAASQGLKSMEHLIRLLSHNQPSNHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPAASASDPQHQSTNLAPPPPPPPFTVSNFLQSQPQSMTLDFTRPNVLNSNLKGGADVETFSVSSSSSFMSSAITGDGSVSNGKLDASIFLAPAQTASGGKPPLSAAPYKKRCHEHDHSENFSGKLSGSASGSGKCHCSKRRKNRMKKTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPR | 258 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 25655946 | 25658277 | - | Sed0010336.2 | Sed13g2094 | 735604 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g2094 | 258 | MobiDBLite | consensus disorder prediction | 74 | 98 | - | - | |
Sed13g2094 | 258 | Pfam | Plant zinc cluster domain | 184 | 235 | IPR018872 | - | |
Sed13g2094 | 258 | SUPERFAMILY | WRKY DNA-binding domain | 235 | 258 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed13g2094 | 258 | Gene3D | WRKY domain | 216 | 258 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed13g2094 | 258 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 16 | 258 | IPR044810 | GO:0003700(InterPro) | |
Sed13g2094 | 258 | MobiDBLite | consensus disorder prediction | 192 | 223 | - | - | |
Sed13g2094 | 258 | ProSiteProfiles | WRKY domain profile. | 232 | 258 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed13g2094 | 258 | Pfam | WRKY DNA -binding domain | 239 | 258 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1638 | Sed-Chr5:30297805 | Sed13g2094 | Sed-Chr13:25655946 | 8.50E-111 | dispersed | |
Sed13g2094 | Sed-Chr13:25655946 | Sed14g0865 | Sed-Chr14:17452343 | 7.30E-23 | dispersed | |
Sed13g2093 | Sed-Chr13:25655946 | Sed13g2094 | Sed-Chr13:25655946 | 9.00E-140 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40499 | PF10533 | Plant_zn_clust | 1.00E-19 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g2094 | - | - | - | 0.0 |