Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2104 ATGGAATTGAAGAAAGGGAAATTCCTGAGGGTTTACTCCAATGAGAAGCAGAATCTGGAGCTTCCATGGGAGAAAAACGAAGCTAAGAACCGCATTGAGTTCTCATTACCCGTTTTCAAAATGGGTACAGCTCCATTATCGAAATTAGAAAATGGGGTTGGAGATAAAAGCAAAATGAACTCAGATTTAAAGAGGTTCAAGATTTTTGTTGAGAATAATATTAACGAACCACAGCAGAAGAGGAGGATTCTCAACCCTGAAAGTGAAACGATTCTGAGATGGAACAGAGTTTTTCTCTTCTCATGTTTGACTGCTCTTTTCGTTGACCCTCTTTTCTTTTACCTTCCTTCTGTGATTCACCATAATAGATCATCATGTATGACTACTGATATCAATTTGGGGATTGTTGTGACTGTTTTTCGAACTTTTGCGGATGTGTTCTATGTTTTGCATATGGTTTTGAAGTTCCGGATGGCTTATGTTTCTCCCACTTCGAGAGTTTTTGGCAAAGGTGAACTTGTTACTGATCCAAAGATGATTGCTAAACGTTACTTGATGTCTGATTTCTTTGTAGATCTCATTGCTTCTCTGCCTCTTCCTCAGATAATGATTTGGTTTATAATGCCAGCAATTAGAAGCTCTCATGCAGATCATACAAACAATACTCTTGTGTTAATAGTCCTGCTTCAGTACATTCCAAGATTTTACCTGATTTTTCCATTGAGTTCCCACATTACCAAAACTGCTGGTGTTGTCACAAAGACTGCTTGGGCTGGAGCTGCTTATAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTACTGTCTGTGGAGCGCCATGCCATGTGCTGGAAGTTCACCTGCAGAAGGGAATTCAGTCCTATGAAGTGTCATCTTGATTATCTGGATTGCGGTACTTTAAACTATGTCGACCGTCGGATTTGGGAACTAAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAAATGTCGTTTTCAAGTACGGGATATTTGCCGATGCAATCACGAAAAACGTCATCTCGTTGAGTTTCCTTCAGAAGTATTTCTATTGTTTATGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGAGTTTGGAGACAAGTACCTTTTTAGGAGAGACTTTATTTGCCATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCGCATTTGATCGGAAATATGCAGACTTATTTGCAATCCATAACTGTGAGACTGGAGGAGTGGAGGGTAAAACGGCGAGACACAGAGGAATGGATGAAACATCGTCAACTACCCGAGGATTTACAAGAACGTGTTCGGAGATTTGTTCAATACAAATGGCTTGCAACAAGAGGAGTTGACGAAGAATCGATCCTTCAAGCTCTTCCTACCGATCTTCGTCGAGATATTCAGCGTCACTTGTGCCTCGACCTTGTTCGACGTGTTCCTTTCTTTGCACAAATGGACGATCAGCTACTTGATGCGATCTGTGAGCGATTGGCATCGTCTTTATGTACACAAGGTACCTACATTGTTCGTGAAGGAGATCCTGTTACCGAGATGCTCTTTATCATCCGAGGAATGCTCGAGAGTTCCACAACAGATGGAGGAAGATCAGGTTTCTTCAATTCAATAACCTTGAGACCTGGAGATTTTTGTGGAGAAGAGCTTCTCGCTTGGGCATTGCTTCCAAATTCATCTATCAGTTTGCCATCTTCTACCAGAACAGTTAGAGCAATCACTGAAGTGGAAGCGTTTGCTCTCCGAGCCGAGGATCTTAAGTTCGTCGCAAACCAGTTTCGGCGTCTCCATAGCAAGAAGCTTCAACACACATTCCGATTTTACTCATATCATTGGAGAACATGGGCAGCCTGCTTCATTCAGGCAGCATGGCGGCGCTTCAAAAGGAGAATCATAGCAAAGTCGCTCAGCATTCAGGAGTCTTTATCGTTGACTCCCAAGAAGCCAACAGCCGAAGAAGCTGAACAAGAAGAGGAAGAACATAATACTCCGCGATCTAGTTACTCTCAAGCAAAACAAAACCTCGGCGTCACGATATTGGCATCGAGGTTTGCTGCGAACACACGAAGAGGAGCACAAAAGCTTAAGGGTGTCGACTTATCGAAGCTGCGAAAGCCTGATGAGCCAGACTTTTCAGAAGAACCAGATGATTAA 2199 42.29 MELKKGKFLRVYSNEKQNLELPWEKNEAKNRIEFSLPVFKMGTAPLSKLENGVGDKSKMNSDLKRFKIFVENNINEPQQKRRILNPESETILRWNRVFLFSCLTALFVDPLFFYLPSVIHHNRSSCMTTDINLGIVVTVFRTFADVFYVLHMVLKFRMAYVSPTSRVFGKGELVTDPKMIAKRYLMSDFFVDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHITKTAGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKFTCRREFSPMKCHLDYLDCGTLNYVDRRIWELNTTVFSQCSPDENVVFKYGIFADAITKNVISLSFLQKYFYCLWWGLQNLSSYGQSLETSTFLGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPEDLQERVRRFVQYKWLATRGVDEESILQALPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQGTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPNSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSIQESLSLTPKKPTAEEAEQEEEEHNTPRSSYSQAKQNLGVTILASRFAANTRRGAQKLKGVDLSKLRKPDEPDFSEEPDD 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25724430 25729745 + Sed0015334.1 Sed13g2104 735614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2104 732 ProSiteProfiles cAMP/cGMP binding motif profile. 492 622 IPR000595 -
Sed13g2104 732 SUPERFAMILY Voltage-gated potassium channels 90 414 - -
Sed13g2104 732 Pfam Cyclic nucleotide-binding domain 515 604 IPR000595 -
Sed13g2104 732 MobiDBLite consensus disorder prediction 665 680 - -
Sed13g2104 732 MobiDBLite consensus disorder prediction 659 686 - -
Sed13g2104 732 SUPERFAMILY cAMP-binding domain-like 422 614 IPR018490 -
Sed13g2104 732 CDD CAP_ED 492 623 IPR000595 -
Sed13g2104 732 Pfam Ion transport protein 94 419 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed13g2104 732 Gene3D Helix hairpin bin 420 483 - -
Sed13g2104 732 MobiDBLite consensus disorder prediction 710 732 - -
Sed13g2104 732 Gene3D - 99 418 - -
Sed13g2104 732 SMART cnmp_10 492 623 IPR000595 -
Sed13g2104 732 FunFam Cyclic nucleotide-gated ion channel 1 419 483 - -
Sed13g2104 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 76 709 - -
Sed13g2104 732 Gene3D Jelly Rolls 490 610 IPR014710 -
Sed13g2104 732 MobiDBLite consensus disorder prediction 710 725 - -
Sed13g2104 732 FunFam Cyclic nucleotide-gated ion channel 1 490 608 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0593 Sed-Chr6:5238145 Sed13g2104 Sed-Chr13:25724430 1.60E-200 dispersed
Sed08g0136 Sed-Chr8:777936 Sed13g2104 Sed-Chr13:25724430 6.30E-231 dispersed
Sed08g0137 Sed-Chr8:777936 Sed13g2104 Sed-Chr13:25724430 3.20E-154 dispersed
Sed08g0535 Sed-Chr8:3524581 Sed13g2104 Sed-Chr13:25724430 3.00E-276 dispersed
Sed08g2022 Sed-Chr8:34506742 Sed13g2104 Sed-Chr13:25724430 3.30E-103 dispersed
Sed11g0465 Sed-Chr11:4316016 Sed13g2104 Sed-Chr13:25724430 6.50E-202 dispersed
Sed12g2238 Sed-Chr12:32810980 Sed13g2104 Sed-Chr13:25724430 1.60E-272 dispersed
Sed13g0079 Sed-Chr13:510575 Sed13g2104 Sed-Chr13:25724430 5.00E-169 dispersed
Sed13g0080 Sed-Chr13:510575 Sed13g2104 Sed-Chr13:25724430 5.00E-169 dispersed
Sed13g0274 Sed-Chr13:1906762 Sed13g2104 Sed-Chr13:25724430 2.40E-99 dispersed
Sed13g2104 Sed-Chr13:25724430 Sed14g0403 Sed-Chr14:4168233 1.40E-183 dispersed
Sed13g2104 Sed-Chr13:25724430 Sed13g2105 Sed-Chr13:25724430 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2104 K05391 - csv:101211072 1232.24