Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2105 ATGGAATTGAAGAAAGGGAAATTCCTGAGGGTTTACTCCAATGAGAAGCAGAATCTGGAGCTTCCATGGGAGAAAAACGAAGCTAAGAACCGCATTGAGTTCTCATTACCCGTTTTCAAAATGGGTACAGCTCCATTATCGAAATTAGAAAATGGGGTTGGAGATAAAAGCAAAATGAACTCAGATTTAAAGAGGTTCAAGATTTTTGTTGAGAATAATATTAACGAACCACAGCAGAAGAGGAGGATTCTCAACCCTGAAAGTGAAACGATTCTGAGATGGAACAGAGTTTTTCTCTTCTCATGTTTGACTGCTCTTTTCGTTGACCCTCTTTTCTTTTACCTTCCTTCTGTGATTCACCATAATAGATCATCATGTATGACTACTGATATCAATTTGGGGATTGTTGTGACTGTTTTTCGAACTTTTGCGGATGTGTTCTATGTTTTGCATATGGTTTTGAAGTTCCGGATGGCTTATGTTTCTCCCACTTCGAGAGTTTTTGGCAAAGGTGAACTTGTTACTGATCCAAAGATGATTGCTAAACGTTACTTGATGTCTGATTTCTTTGTAGATCTCATTGCTTCTCTGCCTCTTCCTCAGATAATGATTTGGTTTATAATGCCAGCAATTAGAAGCTCTCATGCAGATCATACAAACAATACTCTTGTGTTAATAGTCCTGCTTCAGTACATTCCAAGATTTTACCTGATTTTTCCATTGAGTTCCCACATTACCAAAACTGCTGGTGTTGTCACAAAGACTGCTTGGGCTGGAGCTGCTTATAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTACTGTCTGTGGAGCGCCATGCCATGTGCTGGAAGTTCACCTGCAGAAGGGAATTCAGTCCTATGAAGTGTCATCTTGATTATCTGGATTGCGGTACTTTAAACTATGTCGACCGTCGGATTTGGGAACTAAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAAATGTCGTTTTCAAGTACGGGATATTTGCCGATGCAATCACGAAAAACGTCATCTCGTTGAGTTTCCTTCAGAAGTATTTCTATTGTTTATGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGAGTTTGGAGACAAGTACCTTTTTAGGAGAGACTTTATTTGCCATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCGCATTTGATCGGAAATATGCAGACTTATTTGCAATCCATAACTGTGAGACTGGAGGAGTGGAGGGTAAAACGGCGAGACACAGAGGAATGGATGAAACATCGTCAACTACCCGAGGATTTACAAGAACGTGTTCGGAGATTTGTTCAATACAAATGGCTTGCAACAAGAGGAGTTGACGAAGAATCGATCCTTCAAGCTCTTCCTACCGATCTTCGTCGAGATATTCAGCGTCACTTGTGCCTCGACCTTGTTCGACGTGTTCCTTTCTTTGCACAAATGGACGATCAGCTACTTGATGCGATCTGTGAGCGATTGGCATCGTCTTTATGTACACAAGGTACCTACATTGTTCGTGAAGGAGATCCTGTTACCGAGATGCTCTTTATCATCCGAGGAATGCTCGAGAGTTCCACAACAGATGGAGGAAGATCAGGTTTCTTCAATTCAATAACCTTGAGACCTGGAGATTTTTGTGGAGAAGAGCTTCTCGCTTGGGCATTGCTTCCAAATTCATCTATCAGTTTGCCATCTTCTACCAGAACAGTTAGAGCAATCACTGAAGTGGAAGCGTTTGCTCTCCGAGCCGAGGATCTTAAGTTCGTCGCAAACCAGTTTCGGCGTCTCCATAGCAAGAAGCTTCAACACACATTCCGATTTTACTCATATCATTGGAGAACATGGGCAGCCTGCTTCATTCAGGCAGCATGGCGGCGCTTCAAAAGGAGAATCATAGCAAAGTCGCTCAGCATTCAGGAGTCTTTATCGTTGACTCCCAAGAAGCCAACAGCCGAAGAAGCTGAACAAGAAGAGGAAGAACATAATACTCCGCGATCTAGTTACTCTCAAGCAAAACAAAACCTCGGCGTCACGATATTGGCATCGAGGTTTGCTGCGAACACACGAAGAGGAGCACAAAAGCTTAAGGGTGTCGACTTATCGAAGCTGCGAAAGCCTGATGAGCCAGACTTTTCAGAAGAACCAGATGATTAA 2199 42.29 MELKKGKFLRVYSNEKQNLELPWEKNEAKNRIEFSLPVFKMGTAPLSKLENGVGDKSKMNSDLKRFKIFVENNINEPQQKRRILNPESETILRWNRVFLFSCLTALFVDPLFFYLPSVIHHNRSSCMTTDINLGIVVTVFRTFADVFYVLHMVLKFRMAYVSPTSRVFGKGELVTDPKMIAKRYLMSDFFVDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHITKTAGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKFTCRREFSPMKCHLDYLDCGTLNYVDRRIWELNTTVFSQCSPDENVVFKYGIFADAITKNVISLSFLQKYFYCLWWGLQNLSSYGQSLETSTFLGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPEDLQERVRRFVQYKWLATRGVDEESILQALPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQGTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPNSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSIQESLSLTPKKPTAEEAEQEEEEHNTPRSSYSQAKQNLGVTILASRFAANTRRGAQKLKGVDLSKLRKPDEPDFSEEPDD 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25724430 25729745 + Sed0015334.2 Sed13g2105 735615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2105 732 ProSiteProfiles cAMP/cGMP binding motif profile. 492 622 IPR000595 -
Sed13g2105 732 SUPERFAMILY Voltage-gated potassium channels 90 414 - -
Sed13g2105 732 Pfam Cyclic nucleotide-binding domain 515 604 IPR000595 -
Sed13g2105 732 MobiDBLite consensus disorder prediction 665 680 - -
Sed13g2105 732 MobiDBLite consensus disorder prediction 659 686 - -
Sed13g2105 732 SUPERFAMILY cAMP-binding domain-like 422 614 IPR018490 -
Sed13g2105 732 CDD CAP_ED 492 623 IPR000595 -
Sed13g2105 732 Pfam Ion transport protein 94 419 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed13g2105 732 Gene3D Helix hairpin bin 420 483 - -
Sed13g2105 732 MobiDBLite consensus disorder prediction 710 732 - -
Sed13g2105 732 Gene3D - 99 418 - -
Sed13g2105 732 SMART cnmp_10 492 623 IPR000595 -
Sed13g2105 732 FunFam Cyclic nucleotide-gated ion channel 1 419 483 - -
Sed13g2105 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 76 709 - -
Sed13g2105 732 Gene3D Jelly Rolls 490 610 IPR014710 -
Sed13g2105 732 MobiDBLite consensus disorder prediction 710 725 - -
Sed13g2105 732 FunFam Cyclic nucleotide-gated ion channel 1 490 608 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g2105 Sed-Chr13:25724430 Sed14g0403 Sed-Chr14:4168233 1.40E-183 dispersed
Sed13g2104 Sed-Chr13:25724430 Sed13g2105 Sed-Chr13:25724430 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2105 K05391 - csv:101211072 1232.24