Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2106 ATGGCGCCGAGATTGGGGTTTTTGCGTTTGTGGGGAAAGGAGAAAGATTCTCAAAAGGGAACTCCGGTGGTTGTGACGATGGAGAAACCCAACTTCTCCGTCGTGGAGATCGACAGTCCCGACGCCGCATTCCGGCCAGTGGAGAAAAGTAAAGGCAAAAACGCCAAACAAGTCACATGGGTTCTTCTTTTGAAGGCCAATCGAGCTGTCGGTTGCATATCTTGGCTTGTTACAGTTCTCTGGGCATTGTTGGGAACCATCAACAAGAGGCTGATCTACAGGCAAGGAGTTGCCATTGAAGGTGGCAAGTTGGGAAGAGGGAGATTACTGTTTGGAGTTATTAAAGTTTTCTTAGTAACTTCCATAGCTATTCTTGCTTTTGAAATGCTTGCTTATTTCCAAGGCTGGCATTATTTTGAGAATCCTAATCTGCATATTCCTCAGGCTTCCGAGTTGCAAGGATTGCTTCATTCACTTTATGTTGCTTGGTTAACTTTTAGAGCAGACTACATTGCTCCCCTCATTCAATCACTCTCTAAATTTTGCATTGTTTTGTTCCTCATCCAATCGGTGGATCGTTTGATCCTTTGTCTTGGTTGCTTGTGGATAAAGTTCAAAAGAATTGAACCTAAGATTGAAGGGGATCCCTTCGGATTGGATGATGTGGAAGGAGCTGGGTGCAAGTATCCTATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGCGAGGTTTATGAGCAGTCTATATCGGCAGTCTGTCAGATTGATTGGCCAAGAGACCGTTTACTTATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTGTTAATTAAGGCAGAGGTTGCTAAGTGGAACCAAAAGGGGGTAAACATAATCTATCGCCATCGATTAATAAGAACAGGATATAAAGCTGGGAATCTCAAGTCTGCCATGAGTTGTGATTATGTTAGAGACTATGAGTTTGTAGCAATTTTTGATGCTGACTTTCAACCAAATCCAGATTTTCTTAAACTGACAGTCCCCCATTTCAAGGATAATCCTGAGCTAGGTTTAGTTCAGGCCAGATGGTGTTTTGTGAACAAGGACGAAAACTTGTTGACACGCCTTCAAAACATCAACTTGTGTTTCCACTTTGAGGTAGAACAACAAGTTAATGGGGTGTTTCTTAATTTCTTCGGTTTCAACGGCACTGCTGGCGTTTGGAGAATTAAAGCCCTCGAGGAGTCCGGAGGGTGGCTCGAAAGAACAACGGTAGAGGATATGGATATAGCTGTGAGAGCCCATATTAACGGCTGGAAATTCATATTTCTAAACGACGTTAAGGTCCTTTGTGAAGTTCCCGAGTCCTATGAAGCTTATAGGAAACAGCAACATCGTTGGCATTCTGGTCCTATGCAATTGTTCAGGTTGTGTCTTCCTGCAATCATAAGTTCTAAGATAGCAGCATGGAAAAAGGCAAATTTGATACTGTTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACTCTGTTCTGCATAATTCTTCCTTTAACCATGTTCGTACCAGAAGCCGAGCTTCCTTTATGGGTAATCTGCTATGTGCCCATCTTCATGTCATTTCTCAACATTCTTCCATCCCCAAAATCGTTTCCTTTTATCGTTCCTTACCTGCTTTTTGAGAACACTATGTCAGTCACCAAATTCAATGCCATGGTATCTGGTTTATTCCAGTTGGGTAGCTCCTATGAGTGGATTGTGACTAAAAAGGCTGGCAAGTCCTCCGAATCCGACTTACTGGCTGCTGCTGAAAGGGACTCTAAGATAATGAATCAAGCGCAGATCTATCGAGGCGCTTCCGAGAGTGAGCTTTCTGAGTTGAGCCACTTAAAGGAACGCAAAGAAGTAGTTGCCACACCTGTCAAAAAAGTTAACAAGATATTTCGGAAAGAGCTAGCGCTCGCATTTCTTTTACTTTTAGCTTCACTCAGGAGCCTCTTGGCTGCACAAGGAGTTCACTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTAA 2088 42.96 MAPRLGFLRLWGKEKDSQKGTPVVVTMEKPNFSVVEIDSPDAAFRPVEKSKGKNAKQVTWVLLLKANRAVGCISWLVTVLWALLGTINKRLIYRQGVAIEGGKLGRGRLLFGVIKVFLVTSIAILAFEMLAYFQGWHYFENPNLHIPQASELQGLLHSLYVAWLTFRADYIAPLIQSLSKFCIVLFLIQSVDRLILCLGCLWIKFKRIEPKIEGDPFGLDDVEGAGCKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDRLLIQVLDDSDDESIQLLIKAEVAKWNQKGVNIIYRHRLIRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWCFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHINGWKFIFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIISSKIAAWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPLWVICYVPIFMSFLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGKSSESDLLAAAERDSKIMNQAQIYRGASESELSELSHLKERKEVVATPVKKVNKIFRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25730419 25734616 - Sed0021461.1 Sed13g2106 735616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2106 695 FunFam probable xyloglucan glycosyltransferase 5 223 448 - -
Sed13g2106 695 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 156 694 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Sed13g2106 695 Pfam Glycosyl transferase family group 2 324 532 IPR001173 -
Sed13g2106 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 224 449 IPR029044 -
Sed13g2106 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 232 531 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1870 Sed-Chr11:33295111 Sed13g2106 Sed-Chr13:25730419 2.90E-263 dispersed
Sed11g1949 Sed-Chr11:33794837 Sed13g2106 Sed-Chr13:25730419 3.60E-268 dispersed
Sed13g1835 Sed-Chr13:23255083 Sed13g2106 Sed-Chr13:25730419 5.00E-260 dispersed
Sed13g2106 Sed-Chr13:25730419 Sed14g0336 Sed-Chr14:3426051 2.90E-111 dispersed
Sed13g2106 Sed-Chr13:25730419 Sed03g0153 Sed-Chr3:945109 1.30E-271 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2106 - - - 0.0