Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2106 ATGGCGCCGAGATTGGGGTTTTTGCGTTTGTGGGGAAAGGAGAAAGATTCTCAAAAGGGAACTCCGGTGGTTGTGACGATGGAGAAACCCAACTTCTCCGTCGTGGAGATCGACAGTCCCGACGCCGCATTCCGGCCAGTGGAGAAAAGTAAAGGCAAAAACGCCAAACAAGTCACATGGGTTCTTCTTTTGAAGGCCAATCGAGCTGTCGGTTGCATATCTTGGCTTGTTACAGTTCTCTGGGCATTGTTGGGAACCATCAACAAGAGGCTGATCTACAGGCAAGGAGTTGCCATTGAAGGTGGCAAGTTGGGAAGAGGGAGATTACTGTTTGGAGTTATTAAAGTTTTCTTAGTAACTTCCATAGCTATTCTTGCTTTTGAAATGCTTGCTTATTTCCAAGGCTGGCATTATTTTGAGAATCCTAATCTGCATATTCCTCAGGCTTCCGAGTTGCAAGGATTGCTTCATTCACTTTATGTTGCTTGGTTAACTTTTAGAGCAGACTACATTGCTCCCCTCATTCAATCACTCTCTAAATTTTGCATTGTTTTGTTCCTCATCCAATCGGTGGATCGTTTGATCCTTTGTCTTGGTTGCTTGTGGATAAAGTTCAAAAGAATTGAACCTAAGATTGAAGGGGATCCCTTCGGATTGGATGATGTGGAAGGAGCTGGGTGCAAGTATCCTATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGCGAGGTTTATGAGCAGTCTATATCGGCAGTCTGTCAGATTGATTGGCCAAGAGACCGTTTACTTATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTGTTAATTAAGGCAGAGGTTGCTAAGTGGAACCAAAAGGGGGTAAACATAATCTATCGCCATCGATTAATAAGAACAGGATATAAAGCTGGGAATCTCAAGTCTGCCATGAGTTGTGATTATGTTAGAGACTATGAGTTTGTAGCAATTTTTGATGCTGACTTTCAACCAAATCCAGATTTTCTTAAACTGACAGTCCCCCATTTCAAGGATAATCCTGAGCTAGGTTTAGTTCAGGCCAGATGGTGTTTTGTGAACAAGGACGAAAACTTGTTGACACGCCTTCAAAACATCAACTTGTGTTTCCACTTTGAGGTAGAACAACAAGTTAATGGGGTGTTTCTTAATTTCTTCGGTTTCAACGGCACTGCTGGCGTTTGGAGAATTAAAGCCCTCGAGGAGTCCGGAGGGTGGCTCGAAAGAACAACGGTAGAGGATATGGATATAGCTGTGAGAGCCCATATTAACGGCTGGAAATTCATATTTCTAAACGACGTTAAGGTCCTTTGTGAAGTTCCCGAGTCCTATGAAGCTTATAGGAAACAGCAACATCGTTGGCATTCTGGTCCTATGCAATTGTTCAGGTTGTGTCTTCCTGCAATCATAAGTTCTAAGATAGCAGCATGGAAAAAGGCAAATTTGATACTGTTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACTCTGTTCTGCATAATTCTTCCTTTAACCATGTTCGTACCAGAAGCCGAGCTTCCTTTATGGGTAATCTGCTATGTGCCCATCTTCATGTCATTTCTCAACATTCTTCCATCCCCAAAATCGTTTCCTTTTATCGTTCCTTACCTGCTTTTTGAGAACACTATGTCAGTCACCAAATTCAATGCCATGGTATCTGGTTTATTCCAGTTGGGTAGCTCCTATGAGTGGATTGTGACTAAAAAGGCTGGCAAGTCCTCCGAATCCGACTTACTGGCTGCTGCTGAAAGGGACTCTAAGATAATGAATCAAGCGCAGATCTATCGAGGCGCTTCCGAGAGTGAGCTTTCTGAGTTGAGCCACTTAAAGGAACGCAAAGAAGTAGTTGCCACACCTGTCAAAAAAGTTAACAAGATATTTCGGAAAGAGCTAGCGCTCGCATTTCTTTTACTTTTAGCTTCACTCAGGAGCCTCTTGGCTGCACAAGGAGTTCACTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTAA 2088 42.96 MAPRLGFLRLWGKEKDSQKGTPVVVTMEKPNFSVVEIDSPDAAFRPVEKSKGKNAKQVTWVLLLKANRAVGCISWLVTVLWALLGTINKRLIYRQGVAIEGGKLGRGRLLFGVIKVFLVTSIAILAFEMLAYFQGWHYFENPNLHIPQASELQGLLHSLYVAWLTFRADYIAPLIQSLSKFCIVLFLIQSVDRLILCLGCLWIKFKRIEPKIEGDPFGLDDVEGAGCKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDRLLIQVLDDSDDESIQLLIKAEVAKWNQKGVNIIYRHRLIRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWCFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHINGWKFIFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIISSKIAAWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPLWVICYVPIFMSFLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGKSSESDLLAAAERDSKIMNQAQIYRGASESELSELSHLKERKEVVATPVKKVNKIFRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25730419 25734616 - Sed0021461.1 Sed13g2106 735616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2106 695 FunFam probable xyloglucan glycosyltransferase 5 223 448 - -
Sed13g2106 695 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 156 694 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Sed13g2106 695 Pfam Glycosyl transferase family group 2 324 532 IPR001173 -
Sed13g2106 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 224 449 IPR029044 -
Sed13g2106 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 232 531 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2106 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1870 Sed-Chr11:33295111 Sed13g2106 Sed-Chr13:25730419 2.90E-263 dispersed
Sed11g1949 Sed-Chr11:33794837 Sed13g2106 Sed-Chr13:25730419 3.60E-268 dispersed
Sed13g1835 Sed-Chr13:23255083 Sed13g2106 Sed-Chr13:25730419 5.00E-260 dispersed
Sed13g2106 Sed-Chr13:25730419 Sed14g0336 Sed-Chr14:3426051 2.90E-111 dispersed
Sed13g2106 Sed-Chr13:25730419 Sed03g0153 Sed-Chr3:945109 1.30E-271 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g659 . Blo12g00999 . Bda03g00159 . Bpe02g00225 . Bma01g02228 . . Cma01g01581 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04414 Chy04g00287 . . . . . . Bpe04g00141 . . Sed13g2106 . . Cma09g00534 . . . . . Bhi09g02382 Tan01g3749 Cmetu04g0694 . Hepe01g2097 Mch11g0635 . . . . . . . . . . . Cme04g00326
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g3646 . 205 365 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3647 . 220 380 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3648 . 177 337 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed01g0326 . 130 369 REM Transcription Factor Family AT1G49480 55.0 1.0e-57 221.1
Sed01g0325 . 263 395 REM Transcription Factor Family AT1G49480 80.5 7.5e-56 214.9
Sed13g2106 . 1 695 REM Transcription Factor Family AT2G24630 78.7 0.0e+00 1103.6
Sed03g0153 . 6 661 REM Transcription Factor Family AT2G24630 68.3 1.9e-264 909.4
Sed13g1835 . 1 702 REM Transcription Factor Family AT2G24630 65.0 3.3e-264 908.7
Sed11g1949 . 6 660 REM Transcription Factor Family AT2G24630 68.5 1.4e-262 903.3
Sed11g1870 . 8 704 REM Transcription Factor Family AT2G24630 63.8 3.8e-260 895.2
Sed10g1150 . 5 692 REM Transcription Factor Family AT2G24630 65.0 5.3e-254 874.8
Sed09g0998 . 4 689 REM Transcription Factor Family AT2G24630 61.4 2.7e-242 835.9
Sed07g0261 . 5 690 REM Transcription Factor Family AT2G24630 61.7 2.8e-239 825.9
Sed13g2106 . 1 695 REM Transcription Factor Family AT2G24630 78.7 0.0e+00 1103.6
Sed03g0153 . 6 661 REM Transcription Factor Family AT2G24630 68.3 1.9e-264 909.4
Sed13g1835 . 1 702 REM Transcription Factor Family AT2G24630 65.0 3.3e-264 908.7
Sed11g1949 . 6 660 REM Transcription Factor Family AT2G24630 68.5 1.4e-262 903.3
Sed11g1870 . 8 704 REM Transcription Factor Family AT2G24630 63.8 3.8e-260 895.2
Sed10g1150 . 5 692 REM Transcription Factor Family AT2G24630 65.0 5.3e-254 874.8
Sed09g0998 . 4 689 REM Transcription Factor Family AT2G24630 61.4 2.7e-242 835.9
Sed07g0261 . 5 690 REM Transcription Factor Family AT2G24630 61.7 2.8e-239 825.9
Sed13g2106 . 1 695 REM Transcription Factor Family AT2G24630 78.7 0.0e+00 1103.6
Sed03g0153 . 6 661 REM Transcription Factor Family AT2G24630 68.3 1.9e-264 909.4
Sed13g1835 . 1 702 REM Transcription Factor Family AT2G24630 65.0 3.3e-264 908.7
Sed11g1949 . 6 660 REM Transcription Factor Family AT2G24630 68.5 1.4e-262 903.3
Sed11g1870 . 8 704 REM Transcription Factor Family AT2G24630 63.8 3.8e-260 895.2
Sed10g1150 . 5 692 REM Transcription Factor Family AT2G24630 65.0 5.3e-254 874.8
Sed09g0998 . 4 689 REM Transcription Factor Family AT2G24630 61.4 2.7e-242 835.9
Sed07g0261 . 5 690 REM Transcription Factor Family AT2G24630 61.7 2.8e-239 825.9
Sed05g3646 . 205 365 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3647 . 220 380 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3648 . 177 337 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed01g0326 . 130 369 REM Transcription Factor Family AT1G49480 55.0 1.0e-57 221.1
Sed01g0325 . 263 395 REM Transcription Factor Family AT1G49480 80.5 7.5e-56 214.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38