Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2108 ATGTGGTTACCAAGACAGATTGTAGAGAGAAAAGAGAGATTGAATAGTAATAGTAATAATAATAATAATAATAATAATGTGAATGGAATAGTTGGAGTTGCAATTGACAAAGACAAAGGCAGCCAAAGTGCTCTCAAATGGGCTATTGATAATTTGCTTCAAAGAGGCCAAACTATTTTCCTCATTCATGTCAAACTCAGATCCTCTTCTCTTTCTAATTCCCAAAAGATAAATAAATCTGACCCTGGAGCCGGCGTCAAAGAATTGTTCCTTCCTTTTCGTTGCTTTTGTACTCGAAAGGATATTCAATGCAAAGATGTTGTGTTGGAAGATACAGATGTAGCCAAGGCCTTAATTGAGTATGCTGCTAATACTGCCCTTGAGAACATTGTTGTTGGAGCTTCACCAAAAACTGGCTTCTTAAGATTCAAGGTAGTTGATATTCCTGGCAGTGTAGTAAAAGGAGCACCAGATTTTTGCAATGTGTATGTCATTTCAAAAGGTAAAATCCAATCGATGCGTTCGGCATCTCGTCTTGCTCCAGTTGTAAATCCTCTACGAGCTCAACTACCGCAACAAGACAGCACGAAATCCAATACACCAAACTACCCTGTCCCTCAGTCTGCAACTGCTAGAGCATCTTTGGAAAAACCACCAGTTGATATGCTAAGTAAATCACAGGATGAGATAGATTTAATGAGGTCACCATTCACAAGGAAAGGATATAATTACAAATCATCATATGGAGATTTGTCTATGCTAGATTCAGATATATCATTCGTTAGCTCGGGAAGACCGAGCATCGATCGTATATTTCCCTCACTTTATGACGGCCAAGATATGGGTGGAAGAGCTACCCCACAACGGATGTCAGGTAGTTCAGATCTCGACTTTAATCGTAGCTTCGAGTCTCTACATATGGGACGAATGTCGCTGGATATGAACTTCCAATCCGAGTTCTCTTCCTTCTCGCAAGATAGCGACAGATTGTCAATTTCATCACAGCCTATGGATGACGTAGAGGCCGAGATGCGGAGGCTCAAGCTAGAACTCAAACAGACCATGGAAATGTACAGCACAGCCTGCAAGGAAGCACTTACAGCAAAACAAAAGGCGGTTGAACTGCAACGCTGGAAGTTAGAAGAAGAACAAAGATTAGAAGAGGCTAGATTGGCTGGGGAAGCTGCATTGGCACTAGCCGAACAGGAGAAGGCGAAATCGAAAGCAGCCATTGAGGCAGCTGAGGCAGCTAGGAGGATTGCAGAATTGGAAGCACAGAAAAGAATAAAGGCTGAAATGAAAGCACTTGAAGAAGCTGAAAAGAAGAATAAGGCAGTTGATGCATTGACACAAACTGATATCAGATATAGGAAGTATACGATTGAGGAGATCGAAAATGCAACAGAATTCTTTTCCGAATCTCATAAGATCGGAGAAGGAGGTTATGGTCCAGTATACAAGTGTGATCTTGATCATACCCCGGTTGCGATTAAGGTTCTACGTCCAGATGCGGCACAAGGACAATCTCAGTTTAAACAAGAGATAGAAGTACTTTGTTGTATACGCCATCCACACATGGTTCTTCTCCTTGGAGCTTGCCCCGAGTATGGCTGCTTGGTCTATGAGTTCATGGCTAATGGGAGCTTAGAAGACTGCCTTCTGCGACGTGGAAACATGCCTCCACTTTCGTGGCAACTCAGGTTTAAAATTGCAGCTGAAATTGGATCAGCATTGTTGTTTCTACACCAAACAAAGCCGGAGCCACTTGTGCATCGCGATCTCAAACCGGCTAACATTCTTCTCGATCGTAACTTTGTTAGTAAGATAAGTGATGTTGGCTTAGCCAGGCTTGTTCCTCCATCACTGGCCGATAGCGTAACACAGTATCGAATGACATCGACTGCTGGAACATTTTGTTACATTGATCCAGAGTATCAACAGACAGGAATGCTGGGTGTAAAATCAGACATATACTCACTAGGCATCATGTTTCTCCAACTGATAACGTCCAAACCACCAATGGGATTGACTCACTTCGTCGAAAGAGCTATTGAGAATGACACGTTTGCAGATATTCTCGATCCAGCCATCACGGATTGGCCTATAGAAGAAGCTTTGTCATTCGCCAAGTTGTCGCTCAAGTGTGCTGAGTTAAGACGTAAAGATAGGCCGGATCTTGGAAAGGTCATACTTCCAGAGCTTAACAGGTTGAGAAATCTTGCAGAAGATACAGTTCAAACACTGATGGGAAGAGACAGTACAAACCCCTCTCGCAGCAGCAGCCAGGTTTCTCTACACTTGGGAGGAACGGGTTCGTTTCCGCAATCATACAACAGCTCGAGAAATGCGTCCTCGGCCACTCTTTGA 2367 43.13 MWLPRQIVERKERLNSNSNNNNNNNNVNGIVGVAIDKDKGSQSALKWAIDNLLQRGQTIFLIHVKLRSSSLSNSQKINKSDPGAGVKELFLPFRCFCTRKDIQCKDVVLEDTDVAKALIEYAANTALENIVVGASPKTGFLRFKVVDIPGSVVKGAPDFCNVYVISKGKIQSMRSASRLAPVVNPLRAQLPQQDSTKSNTPNYPVPQSATARASLEKPPVDMLSKSQDEIDLMRSPFTRKGYNYKSSYGDLSMLDSDISFVSSGRPSIDRIFPSLYDGQDMGGRATPQRMSGSSDLDFNRSFESLHMGRMSLDMNFQSEFSSFSQDSDRLSISSQPMDDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAVELQRWKLEEEQRLEEARLAGEAALALAEQEKAKSKAAIEAAEAARRIAELEAQKRIKAEMKALEEAEKKNKAVDALTQTDIRYRKYTIEEIENATEFFSESHKIGEGGYGPVYKCDLDHTPVAIKVLRPDAAQGQSQFKQEIEVLCCIRHPHMVLLLGACPEYGCLVYEFMANGSLEDCLLRRGNMPPLSWQLRFKIAAEIGSALLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSLADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITSKPPMGLTHFVERAIENDTFADILDPAITDWPIEEALSFAKLSLKCAELRRKDRPDLGKVILPELNRLRNLAEDTVQTLMGRDSTNPSRSSSQVSLHLGGTGSFPQSYNSSRNASSATL 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25785078 25790572 - Sed0027768.1 Sed13g2108 735618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2108 788 CDD STK_N 30 168 - -
Sed13g2108 788 Coils Coil 397 449 - -
Sed13g2108 788 Gene3D HUPs 9 165 IPR014729 -
Sed13g2108 788 MobiDBLite consensus disorder prediction 749 788 - -
Sed13g2108 788 Pfam Universal stress protein family 31 157 IPR006016 -
Sed13g2108 788 FunFam U-box domain-containing protein 51 544 744 - -
Sed13g2108 788 MobiDBLite consensus disorder prediction 191 209 - -
Sed13g2108 788 SUPERFAMILY Protein kinase-like (PK-like) 450 730 IPR011009 -
Sed13g2108 788 SMART serkin_6 471 734 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g2108 788 Pfam Protein kinase domain 472 725 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g2108 788 PANTHER OS02G0152300 PROTEIN 31 753 IPR051348 -
Sed13g2108 788 Gene3D Phosphorylase Kinase; domain 1 449 543 - -
Sed13g2108 788 ProSiteProfiles Protein kinase domain profile. 471 734 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g2108 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g2108 788 Coils Coil 337 357 - -
Sed13g2108 788 Gene3D Transferase(Phosphotransferase) domain 1 544 755 - -
Sed13g2108 788 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 33 165 - -
Sed13g2108 788 MobiDBLite consensus disorder prediction 191 223 - -
Sed13g2108 788 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 443 543 - -
Sed13g2108 788 Coils Coil 363 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1522 Sed-Chr3:9712282 Sed13g2108 Sed-Chr13:25785078 1.60E-286 dispersed
Sed03g2766 Sed-Chr3:44119791 Sed13g2108 Sed-Chr13:25785078 9.20E-213 dispersed
Sed05g2257 Sed-Chr5:35245229 Sed13g2108 Sed-Chr13:25785078 3.50E-228 dispersed
Sed05g2258 Sed-Chr5:35245229 Sed13g2108 Sed-Chr13:25785078 4.50E-228 dispersed
Sed11g0870 Sed-Chr11:21157119 Sed13g2108 Sed-Chr13:25785078 6.40E-171 dispersed
Sed11g0871 Sed-Chr11:21157119 Sed13g2108 Sed-Chr13:25785078 1.60E-186 dispersed
Sed13g2108 Sed-Chr13:25785078 Sed10g0650 Sed-Chr10:4431141 4.70E-49 dispersed
Sed13g2108 Sed-Chr13:25785078 Sed05g1633 Sed-Chr5:30232090 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80118 PF00069 Pkinase 2.00E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2108 - - - 0.0