Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2109 ATGGCTCATAAACCAGTCCTGTTCTTACTGATCTTATCTATAGTGTGCTTAAACACTTCTTCTAGTACCAGTCCCGAGGCCGAAATCCTCATCAAGTTCAAGAGCTCTCTATCACACAACACCGCCTTCGACAACTGGAATGCTTCGATCACCATCTGCAACGGTGATGATCAATTCTGGACTGGCGTGACGTGCAAGGATAAAGCTCTATATGGGCTACGGCTCGAGAACATGAGCCTAAGCGGCGGTATCGACATAGACGTGCTTGTGAACTTGACATCGTTGAGAAGCTTGAGCTTCATGAACAATAGTTTTCATGGGAGAATGCCTCCAGTTAAGAAACTGGGAGCATTGAGAGCTCTGTATCTGGCATACAACAAATTCTCTGGGGCAATCCCAGATGATGCTTTTCAAAACATGAGGTCGTTGAAAACGGTGCGTTTAGAGGAGAATGGGTTTAAAGGAGAAATTCCTGGTTCAGTTGCTAGTTTGCCGGCGTTGGTGGAGTTGAGCCTTGAAGGGAATAAATTTGAAGGCGAAATTCCTGATTTTATACCAAGGGATTGGAAGTTGTTTAATTTGTCTAATAACCAACTGGAGGGTTCAATACCTTCTGGCTTATCCAATCTCGACTCCAATTCATTTGCAGGAAATCAAGGTTTATGTGGACATCCTCTGAGCCGCTGCAGGTCCCAAAAGAAGTGGCAAGTCATCACCGGAGTCACCGTCGGAATAGTCGTCATAGCAACGATCGTCGTCTACCACCGCTACCGCCGCCGCAGAGGTCCACCACCGGCGGCGGAGCAAGTGGAAGACAAATTGGGCCTAACAAAGGCCCAAAAGCCGGAGCCCACAGAAGAAAATGCGAAGCTGCAGTTTGTACGGGCCGACAGGCCCACATTCGACCTGGAAGAGCTGTTGCGGGCCCCGGCAGAAGTATTGGGGGGCGGAAGTTTCGGGTCGGCTTATAAGGCCCTGCTTTTAAATGGGCCCCCGGTTGTGGTGAAGAGGCTTCGGCCCATGAGATGCGTTGGGTTCGAAGAGTTTCAGGAGCATATGAAAAAGCTGGGGAGTATTTCACATCCTAATTTGCTGTCTCCTTTGGCATTTTATTATAGAAATGAAGATAAGCTTTTGATTTCTGAGTTTGTTGGGAATGGGAACTTGGCTGCTCATCTGCATGCCCAAGGTGAGGGCACAGCTGGCAGTATTGGGCTGGACTGGGGCAGGCGGCTAGGAATCATAAAAGGAGTGGGCCGAGGGCTGGCCCATCTCCACAGGTGTCTCCCAAACCAAACCCTACCCCACGGCCATTTAAAATCCTCAAACATTCTCCTAACCCCCAATTTCGAGCCTCTATTAACCGACTTCGGCCTGGACCCACTGGTCTGCGAGAACCAGGCCCACCGGTTCATGGCGGCCTACAAGTCGCCGGAGTACACCCGCCGCCGCCGAGTCTCCAGGAAGACCGACGTGTGGAGCCTCGGGATCCTGATCCTGGAGGTTCTGACGGGGAGGCTCCCGGCGAACTACCTCCGGCACGGCGGGGACCTGGCGGCGTGGGTGAAGTCGGCGGTGGGGGAGGAGGTTCTGGACGTGGAGATGGTGAGGGGGGCGAAGGAGGATGAGGGCGGGGAGATGATGCGGCTGTTGAGGATCGGGATGATGTGTTGCGAGGCGGAGGAGGATGGACGGTGGGGATTGAAGGAGGCTGTGGACAAGATCGAGGACTTGAAAGAGGCGGACAGTTTTTCTACGGATGCTGAGTTTTATTCCTCTTTTGCTACTGAAATCGGTGTGACTTCTTTAGACAATATCTGA 1821 52.0 MAHKPVLFLLILSIVCLNTSSSTSPEAEILIKFKSSLSHNTAFDNWNASITICNGDDQFWTGVTCKDKALYGLRLENMSLSGGIDIDVLVNLTSLRSLSFMNNSFHGRMPPVKKLGALRALYLAYNKFSGAIPDDAFQNMRSLKTVRLEENGFKGEIPGSVASLPALVELSLEGNKFEGEIPDFIPRDWKLFNLSNNQLEGSIPSGLSNLDSNSFAGNQGLCGHPLSRCRSQKKWQVITGVTVGIVVIATIVVYHRYRRRRGPPPAAEQVEDKLGLTKAQKPEPTEENAKLQFVRADRPTFDLEELLRAPAEVLGGGSFGSAYKALLLNGPPVVVKRLRPMRCVGFEEFQEHMKKLGSISHPNLLSPLAFYYRNEDKLLISEFVGNGNLAAHLHAQGEGTAGSIGLDWGRRLGIIKGVGRGLAHLHRCLPNQTLPHGHLKSSNILLTPNFEPLLTDFGLDPLVCENQAHRFMAAYKSPEYTRRRRVSRKTDVWSLGILILEVLTGRLPANYLRHGGDLAAWVKSAVGEEVLDVEMVRGAKEDEGGEMMRLLRIGMMCCEAEEDGRWGLKEAVDKIEDLKEADSFSTDAEFYSSFATEIGVTSLDNI 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25795179 25799000 - Sed0018364.1 Sed13g2109 735619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2109 606 SUPERFAMILY L domain-like 27 228 - -
Sed13g2109 606 Pfam Leucine Rich Repeat 192 210 IPR001611 GO:0005515(InterPro)
Sed13g2109 606 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524(InterPro)
Sed13g2109 606 ProSiteProfiles Protein kinase domain profile. 308 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed13g2109 606 Gene3D Transferase(Phosphotransferase) domain 1 385 595 - -
Sed13g2109 606 SUPERFAMILY Protein kinase-like (PK-like) 312 576 IPR011009 -
Sed13g2109 606 Pfam Protein tyrosine and serine/threonine kinase 312 510 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed13g2109 606 Gene3D Phosphorylase Kinase; domain 1 275 383 - -
Sed13g2109 606 MobiDBLite consensus disorder prediction 262 288 - -
Sed13g2109 606 Gene3D Ribonuclease Inhibitor 188 230 IPR032675 -
Sed13g2109 606 Gene3D Ribonuclease Inhibitor 25 187 IPR032675 -
Sed13g2109 606 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 25 583 IPR046959 -
Sed13g2109 606 MobiDBLite consensus disorder prediction 274 288 - -
Sed13g2109 606 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Sed13g2109 606 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0426 Sed-Chr8:2616673 Sed13g2109 Sed-Chr13:25795179 3.50E-114 dispersed
Sed13g2109 Sed-Chr13:25795179 Sed03g2418 Sed-Chr3:21038254 3.60E-49 dispersed
Sed13g2109 Sed-Chr13:25795179 Sed12g2137 Sed-Chr12:31974919 1.80E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80119 PF00069 Pkinase 3.10E-24 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2109 K28077 - csv:101210337 899.042