Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2120 ATGGGAGAGTCGGGTGAAGAGGAGGCTTTTTCTAGAGCCACGAGTAAACATCAAACGACCGCTGATACTGTCAAGAAAAGATGGACTCGATCAGTTCCCGGCAAGGATATTTCTCCATATAACAAAACGAAAACACATTCCACTCTAAGTTTCGAAGATGTCCAAAGTGAATCCGGCTGTTTAAACTGCACATCCAGCAAAAGTTGTGCGATAGTGCGCTCAAAAACAAAATTAATGAACATTTTGATACAAAGAGAGAAATATCAGGAAGTCCAGAACATTTTTGACAATTTGATTGCGGAGGGGCATAGGCCCTCTCTAGTAACATATACAACCCTGCTGTCTGCATTGACTGACCAGAAGCGCTTCAATCTTATCGATTCAGTTATACAAATGGTGGAAGAAAAAGGACTGATACCGGACGCGATATTTTGTAACGCTGTTATCAATGCTTTCTCTGAAGCAGGTAATGTTGAAGAAGCTATGATAGTTTTTAGAAAAATGAAGGCTGATGGACTAAAGCTCAGTACAAGCACTTTCAACACTTTGATAAAAGGATATGGCATTGCTGGTAGGCCTGAAGAAACTACAGAATTGCTGGACTTGATGTCTAAAGAGGGAAATTTAAAACCCAATCTGAGAACTTGTAATGTACTTGTTAGAGCCTGGTGTAACAAGAAGAAAATCCCAGAGGCATGGAATGTGGTACAAAATATGATAGACCTGGGAATCAAACCAGACGCTGTTACTTACAACACCATAGCGACTGCTCATGTTCAGAGTGGAGAAACAGATCGAGCTGAAGAGCTTATTCAACAGATGCTAGGTAACGGTATTCAACCGAATCAACGGACGTGCAGCATTGTAGCTTGTGGATATTGCAAAGAAGGTAAACTAAAAGAGGCCTTGAGGTTTGTATACAAGATGAAGGATCTTGACGTTCAGCCTAATTTGGTTCTTTTTAACTCACTGATCAAGGGATTTGCTGAGTCGATGGACAAAAATGGGTTTGACAAGGTTTTAATGATGATGGAAGAATTTGGGGTCAAGCCAGATGTGATCACTTATAGCACAGTCATGAATGCATGGAGCACGGCTGGATTCATGGGAAAATGCAGAGAAATTTTCGATGAGATGTTGAAGGCCGGTATCGAACCAGACGCACATGCGTACAGCATTCTTGCCAAAGGGTACGTGTGTTCACAAGAACCAGAAAAGGCTGAGGAATTATTAAATACCATGACTAAATGTGGAAAATGTCCAAACGTTGTTATTTTTACAACCATCATTAGTGGTTGGTGCAGTTCAGGAAGAATGGATAATGCCATAAAGATTTTACACACCATGAGTAAATATGGAGTTTCTCCTAATTTGACGACTTTTGAGACTATAATAGCGGGATATAGAGAGACAAAACAGCCATGGAAAGCAGAGGAAATGCTTCAAATAATGGAGAAATTTGAAGTGAAACCTAAGAAATCTACTCTCTTATTAGTTGCAGAAGCCTGGCGCTCTATTCGATTGACAAAAGAAGCAAACAGAATTCTGGGCATCATAAAAAAAACCGAGGCGAAGAATGAGAATCGAGCGGAGAGCTCGGAAAAGCTCTATCAGAAGCAGCCTTCGAGCCCCTCTCATACAAACATATTGCAGATTCCGAGCGCTACTGCTGTCGATCAAAAGGGGTCAACCATTGGAACCAAAAGAAACCGTGTAGTACTGATAAATGCTGATTTTTCGTCGGATAGTTCGTGGCTTACAACAAAATCCATTCATCAGTCTCGCACTTGCAAGTTTGGAAAAAGGTTGCCTATCATCTCTCGCAAACAGTCGTCAGCACAACTTGGTATGTACAGTCATTTCACTCATTCATGTATAGTCTTAACATTGATGTGA 1896 40.88 MGESGEEEAFSRATSKHQTTADTVKKRWTRSVPGKDISPYNKTKTHSTLSFEDVQSESGCLNCTSSKSCAIVRSKTKLMNILIQREKYQEVQNIFDNLIAEGHRPSLVTYTTLLSALTDQKRFNLIDSVIQMVEEKGLIPDAIFCNAVINAFSEAGNVEEAMIVFRKMKADGLKLSTSTFNTLIKGYGIAGRPEETTELLDLMSKEGNLKPNLRTCNVLVRAWCNKKKIPEAWNVVQNMIDLGIKPDAVTYNTIATAHVQSGETDRAEELIQQMLGNGIQPNQRTCSIVACGYCKEGKLKEALRFVYKMKDLDVQPNLVLFNSLIKGFAESMDKNGFDKVLMMMEEFGVKPDVITYSTVMNAWSTAGFMGKCREIFDEMLKAGIEPDAHAYSILAKGYVCSQEPEKAEELLNTMTKCGKCPNVVIFTTIISGWCSSGRMDNAIKILHTMSKYGVSPNLTTFETIIAGYRETKQPWKAEEMLQIMEKFEVKPKKSTLLLVAEAWRSIRLTKEANRILGIIKKTEAKNENRAESSEKLYQKQPSSPSHTNILQIPSATAVDQKGSTIGTKRNRVVLINADFSSDSSWLTTKSIHQSRTCKFGKRLPIISRKQSSAQLGMYSHFTHSCIVLTLM 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25866784 25871378 + Sed0002455.2 Sed13g2120 735630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2120 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Sed13g2120 631 NCBIfam pentatricopeptide repeat 108 142 IPR002885 -
Sed13g2120 631 NCBIfam pentatricopeptide repeat 354 388 IPR002885 -
Sed13g2120 631 NCBIfam pentatricopeptide repeat 424 457 IPR002885 -
Sed13g2120 631 NCBIfam pentatricopeptide repeat 179 212 IPR002885 -
Sed13g2120 631 NCBIfam pentatricopeptide repeat 215 248 IPR002885 -
Sed13g2120 631 NCBIfam pentatricopeptide repeat 285 317 IPR002885 -
Sed13g2120 631 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Sed13g2120 631 NCBIfam pentatricopeptide repeat 249 282 IPR002885 -
Sed13g2120 631 NCBIfam pentatricopeptide repeat 145 176 IPR002885 -
Sed13g2120 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Sed13g2120 631 Gene3D Tetratricopeptide repeat domain 276 339 IPR011990 GO:0005515(InterPro)
Sed13g2120 631 Gene3D Tetratricopeptide repeat domain 203 275 IPR011990 GO:0005515(InterPro)
Sed13g2120 631 Pfam PPR repeat family 421 468 IPR002885 -
Sed13g2120 631 Pfam PPR repeat family 292 329 IPR002885 -
Sed13g2120 631 Pfam PPR repeat family 140 187 IPR002885 -
Sed13g2120 631 Pfam PPR repeat family 211 256 IPR002885 -
Sed13g2120 631 Pfam PPR repeat family 351 398 IPR002885 -
Sed13g2120 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Sed13g2120 631 MobiDBLite consensus disorder prediction 529 549 - -
Sed13g2120 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Sed13g2120 631 MobiDBLite consensus disorder prediction 535 549 - -
Sed13g2120 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Sed13g2120 631 Gene3D Tetratricopeptide repeat domain 49 202 IPR011990 GO:0005515(InterPro)
Sed13g2120 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Sed13g2120 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Sed13g2120 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Sed13g2120 631 PANTHER OS01G0228400 PROTEIN 14 628 - -
Sed13g2120 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Sed13g2120 631 MobiDBLite consensus disorder prediction 1 28 - -
Sed13g2120 631 Gene3D Tetratricopeptide repeat domain 340 586 IPR011990 GO:0005515(InterPro)
Sed13g2120 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Sed13g2120 631 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Sed13g2120 631 SUPERFAMILY TPR-like 215 311 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2120 K17710 - - rcu:8271213 760.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed13g2119 Sed-Chr13:25866784 Sed13g2120 Sed-Chr13:25866784 3.20E-112 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g333 . Blo12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0612 . . Chy04g00266 . . . . . . Bpe04g00340 . . Sed13g2120 . . . . . . . . Bhi09g02416 Tan01g3776 Cmetu04g2828 . Hepe01g2116 Mch11g0654 . . . . . . . . . . . Cme04g00297
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013935 1 2 1 0 1 1 0 0 1 0 0 1 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 2 1 1 23