Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed13g2130 ATGGATAGTTTCTGTTGTTTTAATGTTTCATACTCTGGGAATAGATCCGCATTCAACTACGGTAAGGGAAGAAGCCATGAGGGGATAATCAAGTATGGTTTCTGCCTAGTAAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTGAGATTCAAGAACATGAATTGGGGCTCTTTGCTATTTATGATGGCCATTCAGGAGAAAGTGTGCCTGCCTATTTACAAAAGCATTTGTTTTCGAATATCCTGAAGGAGGAAGATTTTTTGGCTGACCCGAACAACGCGATGTCAAAAGCCTATGAGAAGACAGACCAGGCAATTCTATCCCACAGCTCTGATTTGGGTCGTGGTGGATCGACTGCTGTTACTGTTATTCTGATTAATGGCCGACGATTATGGGTGGCTAATGTTGGAGACTCACGTGCAGTTCTTTCGAGAGGGGGTGAAGCTGTGCAGTTGTCCATCGATCATGAGCCGAATACAGAACGCGGCATGATCGAGAATAAAGGTGGCTTTGTTTCAAACATGCCAGGAGATGTACCTCGAGTGAATGGGCAGCTAGCTGTTTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTGCGATCGGATCCTGACACACGTGATGTCACGATAGAAGCCGATATGGACATATTAATTCTCGCCAGCGACGGTCTTTGGAAGGTAATGACCAATCAAGAAGCAGTCGACATTGCTCGAAAAATTAAAGACCCGTTGAAGGCTGCTAAGCAGTTAATAACTGAAGCTTTGCTGAACGAGAGCAAAGATGATATATCATGCATTGTGGTTAGATTTAGGTGA 840 43.93 MDSFCCFNVSYSGNRSAFNYGKGRSHEGIIKYGFCLVKGKANHPMEDYHVAKFVEIQEHELGLFAIYDGHSGESVPAYLQKHLFSNILKEEDFLADPNNAMSKAYEKTDQAILSHSSDLGRGGSTAVTVILINGRRLWVANVGDSRAVLSRGGEAVQLSIDHEPNTERGMIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDTRDVTIEADMDILILASDGLWKVMTNQEAVDIARKIKDPLKAAKQLITEALLNESKDDISCIVVRFR 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 25963283 25968885 + Sed0028233.1 Sed13g2130 735640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed13g2130 279 SUPERFAMILY PP2C-like 24 278 IPR036457 -
Sed13g2130 279 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Sed13g2130 279 SMART PP2C_4 23 276 IPR001932 -
Sed13g2130 279 Gene3D - 26 279 IPR036457 -
Sed13g2130 279 PANTHER PROTEIN PHOSPHATASE 30 276 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed13g2130 279 CDD PP2Cc 30 278 IPR001932 -
Sed13g2130 279 FunFam Probable protein phosphatase 2C 39 21 279 - -
Sed13g2130 279 SMART PP2C_SIG_2 42 278 IPR001932 -
Sed13g2130 279 Pfam Protein phosphatase 2C 40 271 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1603 Sed-Chr5:29810283 Sed13g2130 Sed-Chr13:25963283 3.70E-114 dispersed
Sed13g0344 Sed-Chr13:2310373 Sed13g2130 Sed-Chr13:25963283 2.60E-106 dispersed
Sed13g0345 Sed-Chr13:2310373 Sed13g2130 Sed-Chr13:25963283 1.30E-113 dispersed
Sed13g1942 Sed-Chr13:24319361 Sed13g2130 Sed-Chr13:25963283 1.10E-42 dispersed
Sed13g1943 Sed-Chr13:24319361 Sed13g2130 Sed-Chr13:25963283 1.50E-53 dispersed
Sed13g2130 Sed-Chr13:25963283 Sed13g2132 Sed-Chr13:25963283 5.10E-131 dispersed
Sed13g2130 Sed-Chr13:25963283 Sed13g2131 Sed-Chr13:25963283 1.10E-149 tandem
Sed13g2130 Sed-Chr13:25963283 Sed05g1601 Sed-Chr5:29810283 1.60E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed13g2130 K17506 - csv:101213414 501.901