Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed13g2131 | ATGTTTCATACTCTGGGATCCGCATTCAACTACGGTAAGGGAAGAAGCCATGAGGGGATAATCAAGTATGGTTTCTGCCTAGTAAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTTGAGATTCAAGAACATGAATTGGGGCTCTTTGCTATTTATGATGGCCATTCAGGAGAAAGTGTGCCTGCCTATTTACAAAAGCATTTGTTTTCGAATATCCTGAAGGAGGAAGATTTTTTGGCTGACCCGAACAACGCGATGTCAAAAGCCTATGAGAAGACAGACCAGGCAATTCTATCCCACAGCTCTGATTTGGGTCGTGGTGGATCGACTGCTGTTACTGTTATTCTGATTAATGGCCGACGATTATGGGTGGCTAATGTTGGAGACTCACGTGCAGTTCTTTCGAGAGGGGGTGAAGCTGTGCAGTTGTCCATCGATCATGAGCCGAATACAGAACGCGGCATGATCGAGAATAAAGGTGGCTTTGTTTCAAACATGCCAGGAGATGTACCTCGAGTGAATGGGCAGCTAGCTGTTTCACGAGCATTTGGAGACAAGAGTCTCAAATCTCACCTGCGATCGGATCCTGACACACGTGATGTCACGATAGAAGCCGATATGGACATATTAATTCTCGCCAGCGACGGTCTTTGGAAGGTAATGACCAATCAAGAAGCAGTCGACATTGCTCGAAAAATTAAAGACCCGTTGAAGGCTGCTAAGCAGTTAATAACTGAAGCTTTGCTGAACGAGAGCAAAGATGATATATCATGCATTGTGGTTAGATTTAGGTGA | 813 | 44.53 | MFHTLGSAFNYGKGRSHEGIIKYGFCLVKGKANHPMEDYHVAKFVEIQEHELGLFAIYDGHSGESVPAYLQKHLFSNILKEEDFLADPNNAMSKAYEKTDQAILSHSSDLGRGGSTAVTVILINGRRLWVANVGDSRAVLSRGGEAVQLSIDHEPNTERGMIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDTRDVTIEADMDILILASDGLWKVMTNQEAVDIARKIKDPLKAAKQLITEALLNESKDDISCIVVRFR | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 25963283 | 25968885 | + | Sed0028233.2 | Sed13g2131 | 735641 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed13g2131 | 270 | CDD | PP2Cc | 21 | 269 | IPR001932 | - | |
Sed13g2131 | 270 | SMART | PP2C_SIG_2 | 33 | 269 | IPR001932 | - | |
Sed13g2131 | 270 | SMART | PP2C_4 | 14 | 267 | IPR001932 | - | |
Sed13g2131 | 270 | SUPERFAMILY | PP2C-like | 16 | 269 | IPR036457 | - | |
Sed13g2131 | 270 | ProSiteProfiles | PPM-type phosphatase domain profile. | 22 | 269 | IPR001932 | - | |
Sed13g2131 | 270 | FunFam | Probable protein phosphatase 2C 39 | 12 | 270 | - | - | |
Sed13g2131 | 270 | PANTHER | PROTEIN PHOSPHATASE | 21 | 267 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Sed13g2131 | 270 | Pfam | Protein phosphatase 2C | 31 | 262 | IPR001932 | - | |
Sed13g2131 | 270 | Gene3D | - | 17 | 270 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1602 | Sed-Chr5:29810283 | Sed13g2131 | Sed-Chr13:25963283 | 3.10E-133 | dispersed | |
Sed13g2131 | Sed-Chr13:25963283 | Sed14g1623 | Sed-Chr14:24410889 | 2.80E-65 | dispersed | |
Sed13g2130 | Sed-Chr13:25963283 | Sed13g2131 | Sed-Chr13:25963283 | 1.10E-149 | tandem | |
Sed13g2131 | Sed-Chr13:25963283 | Sed13g2132 | Sed-Chr13:25963283 | 4.90E-131 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed13g2131 | K17506 | - | csv:101213414 | 477.248 |